[cellml-discussion] Concerning the CellML Model Repository
James Lawson
j.lawson at auckland.ac.nz
Mon Jun 25 15:24:45 NZST 2007
Matt wrote:
> I think BioModels had every intention of harbouring CellML models too
> if we were interested. I'm sure they are listening :-)
they already do
>
>
>
> On 6/22/07, David Nickerson <david.nickerson at nus.edu.sg> wrote:
>> It might also be worth looking into what the folks over at
>> http://www.biomodels.net/ are up to. Given they seem to have curation
>> built into their repository and maybe some other features worth looking
>> into?
>>
>> And if we're going to be starting from scratch, there might be some
>> value into seeing how the biomodels repository could be extended to
>> support CellML?
>>
>> When you start seeing comments like "BioModels Database ranked first
>> data resource for Systems Biology" in Nature Biotechnology, it might be
>> a hint that they're doing something right and we should maybe be working
>> with them rather than independently.
>>
>>
>> David.
>>
>>
>> Tommy Yu wrote:
>>> Hi,
>>>
>>> I have written down some of my thoughts on how the model repository could be put together.
>>>
>>> http://www.cellml.org/Members/tommy/repository_redesign.html
>>>
>>> It is still a pretty rough document. The usage example section gives a rough outline on what I see people might be doing with the repository and how this design could address those issues, which I think it will be of interest to users. It is not an exhaustive list, yet.
>>>
>>> I must also note the design outlined is quite a drastic departure from what we have now (it will be yet another new repository). However, it is more true to the one envisioned before according to http://www.cellml.org/wiki/CellMLModelRepositories, except I have an addition layer that will assist in pulling content and drawing relationships between models.
>>>
>>> Feel free to take it apart and/or build on top of it.
>>>
>>> Cheers,
>>> Tommy.
>>> _______________________________________________
>>> cellml-discussion mailing list
>>> cellml-discussion at cellml.org
>>> http://www.cellml.org/mailman/listinfo/cellml-discussion
>> --
>> David Nickerson, PhD
>> Research Fellow
>> Division of Bioengineering
>> Faculty of Engineering
>> National University of Singapore
>> Email: david.nickerson at nus.edu.sg
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>>
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