[cellml-discussion] CellML OWL work in progress

[Randy Heiland]

Thanks for the reply, Sarala.  I/we look forward to your drafts.

best, Randy

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> Date: September 4, 2008 8:00:01 PM EDT
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> Today's Topics:
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>    1. CellML OWL work in progress (Sarala Dissanayake)
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> ----------------------------------------------------------------------
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> Message: 1
> Date: Thu, 04 Sep 2008 20:32:33 +1200
> From: Sarala Dissanayake <sarala.dissanayake at auckland.ac.nz>
> Subject: [cellml-discussion] CellML OWL work in progress
> To: CellML Discussion List <cellml-discussion at cellml.org>
> Message-ID:
> 	<20080904203233.ui1ruzjkoc4oc00s at webmail.bioeng.auckland.ac.nz>
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> Hi Randy and Ely,
>
> I'm developing a framework for annotating and visualizing CellML
> models. A solution has been developed that involves:
> - an ontology for storing CellML models in OWL format (CellMLOWL) and
> a set of rules for binding these CellMLOWL instances to CellML models.
> - an ontology which represents biophysical and biological concepts
> that are covered in CellML models (CellMLBio) and a set of rules for
> binding these concepts to CellMLOWL models;
> - a specification for building visual templates that support a visual
> language that can be used to represent all biophysical and biological
> processes covered in CellMLBio ontology and the rules for binding the
> visual language to concepts within the CellMLBio ontology;
> - a visual editing tool, that combines the visual language and
> ontologies to visualize CellML models.
>
> I'm currently writing up my thesis and 3 papers. I should be able to
> make these available to you in draft form soon.
>
> Cheers,
> Sarala
>
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