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[cellml-discussion] Auckland CellML Group Meeting Minutes(2008-02-07)


Chronological Thread 
  • From: david.nickerson at nus.edu.sg (David Nickerson)
  • Subject: [cellml-discussion] Auckland CellML Group Meeting Minutes(2008-02-07)
  • Date: Mon, 11 Feb 2008 11:42:55 +0800

just a couple of points arising from these meeting minutes...

Any outcomes from the breakaway session discussing the "if and how" of
creating an annotated or informative version of the normative 1.2
specification draft?

Under the SBML to CellML conversion, I'm just wondering what
implementations are being referred to as being in C++ and Java?

Generating Fortran code from the CellML model repository does little in
the way of helping to get CellML models into CMISS. As well as the
Fortran code needing to adhere to a internal cmiss interface in order to
be usable as a USER_CELL routine (the presumable goal of this
suggestion), there needs to be suitable input files (most notably the
ipcell file) generated when using a USER_CELL model in cmiss. The
current use of CellML within cmiss will allow the user to be prompted
for the input file creation, but this does not apply to USER_CELL
models. A more useful alternative might be to create a standard
USER_CELL routine which can map the internal cmiss interface to that
currently defined by the C code which the repository is already capable
of generating, and then providing a simple little tool to generate
ipcell files from the CellML code. There is no need to restrict the code
being used in cmiss to Fortran.


Andre.




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