Chronological Thread 

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James Lawson wrote:
> James Lawson wrote:
>> Hi all,
>>
>> We're currently doing some work on the Tools page of the website at
>> http://www.cellml.org/tools and I'd just like people to have a look
>> through the listing there and check that your tools are all there.
>> The listing is fairly old so I know we're missing a few. Apologies in
>> advance if your tool is missing, but please let us know and we'll
>> rectify that ASAP.
>>
>> Kind regards,
>> James Lawson
>> _______________________________________________
>> cellml-discussion mailing list
>> cellml-discussion at cellml.org
>> http://www.cellml.org/mailman/listinfo/cellml-discussion
>>
> In particular, we don't have the CellML <-> SBML translators up there.
> So if anyone could link me to them and maybe give me a short paragraph
> description about them, that would be great.
>
The page general page about SBML converters developed at EBI is :
http://www.ebi.ac.uk/compneur-srv/sbml/converters/SBMLConverters.html

Specific CellML pages:
http://www.ebi.ac.uk/compneur-srv/sbml/converters/SBMLtoCellML.html
http://www.ebi.ac.uk/compneur-srv/sbml/converters/CellMLtoSBML.html

Note : The stylesheets on these pages are not entirely up-to-date with
the ones used to create the export formats of Biomodels DB, I still have
to work on some issues before updating the web site.

As for a really short description, they are translation tools, written
using XSLT.

The SBML to CellML converter is creating a CellML file using reactions
and we need to update it. Andrew is currently working on writing a new
version of it, the prototype is done but we need to correct some issues
before to use replace the XSLT version. This new version is written in
Ruby and is focusing mainly on getting the units as right as possible
and using the latest CellML specs without using reactions, not doing
anything about metadata yet. We are also planning to update the CellML
to SBML converter, probably written in Java when the new specifications
are out.

Cheers,
Nico

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• [cellml-discussion] tools that use and / or work with CellML, James Lawson, 05/04/2009
  • [cellml-discussion] tools that use and / or work with CellML, David Cumin, 05/04/2009
    • [cellml-discussion] tools that use and / or work with CellML, James Lawson, 05/04/2009
    • [cellml-discussion] tools that use and / or work with CellML, James Lawson, 05/04/2009
  • [cellml-discussion] tools that use and / or work with CellML, James Lawson, 05/04/2009
    • [cellml-discussion] tools that use and / or work with CellML, Nicolas Rodriguez, 05/06/2009
      • [cellml-discussion] tools that use and / or work with CellML, James Lawson, 05/08/2009
  • <Possible follow-up(s)>
  • [cellml-discussion] tools that use and / or work with CellML, James Lawson, 05/04/2009
    • [cellml-discussion] tools that use and / or work with CellML, James Lawson, 05/18/2009

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