Chronological Thread 

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Hi Maxwell,

If you wrap the MathML into a CellML model/component, COR does a good
job generating Matlab. OpenCell should work as well. Actually, I think
OpenCell might be able to generate all the variables for you from the
equation, whereas in COR you might also have to create the variables
before it will let you export to Matlab.

Cheers,
David.

On Tue, Oct 25, 2011 at 7:58 AM, Maxwell Neal <mneal at u.washington.edu>
wrote:
> Hi all,
>
> Does anyone know of a good java package for translating MathML into MATLAB?
> Many thanks,
>
> M
>
> ---------------------------------
> Maxwell Neal
>
> Post-doctoral researcher
> University of Washington
> mneal at uw.edu
> (206) 543-8769
> ---------------------------------
>
>
>
>
> On Oct 23, 2011, at 4:00 PM, cellml-discussion-request at cellml.org wrote:
>
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>> ? 1. Re: cellml-discussion Digest, Vol 87, Issue 9 (Maxwell Neal)
>>
>>
>> ----------------------------------------------------------------------
>>
>> Message: 1
>> Date: Sat, 22 Oct 2011 19:02:16 -0700
>> From: Maxwell Neal <mneal at u.washington.edu>
>> Subject: Re: [cellml-discussion] cellml-discussion Digest, Vol 87,
>> ? ? ? Issue 9
>> To: cellml-discussion at cellml.org
>> Message-ID: <28198366-57CF-471F-8882-34E73FC05C35 at u.washington.edu>
>> Content-Type: text/plain; charset=us-ascii
>>
>> Great. Thanks, Lucian and David.
>>
>> M
>>
>> ---------------------------------
>> Maxwell Neal
>>
>> Post-doctoral researcher
>> University of Washington
>> mneal at uw.edu
>> (206) 543-8769
>> ---------------------------------
>>
>>
>>
>>
>> On Oct 22, 2011, at 4:00 PM, cellml-discussion-request at cellml.org wrote:
>>
>>> Send cellml-discussion mailing list submissions to
>>> ? ? ?cellml-discussion at cellml.org
>>>
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>>> Today's Topics:
>>>
>>> ?1. Re: nested components in CellML (David Nickerson)
>>>
>>>
>>> ----------------------------------------------------------------------
>>>
>>> Message: 1
>>> Date: Sat, 22 Oct 2011 14:30:37 +1300
>>> From: David Nickerson <david.nickerson at gmail.com>
>>> Subject: Re: [cellml-discussion] nested components in CellML
>>> To: CellML Discussion List <cellml-discussion at cellml.org>
>>> Message-ID:
>>> ? ? ?<CADizRjhqHMOpDDm=8xoZLAD=BCOGNSm0XdLFma6Yeox20K-R4Q at
>>> mail.gmail.com>
>>> Content-Type: text/plain; charset=ISO-8859-1
>>>
>>> On Sat, Oct 22, 2011 at 10:10 AM, Lucian Smith <lpsmith at
>>> spod-central.org> wrote:
>>>> * Maxwell Neal <mneal at u.washington.edu> [2011-10-21 22:03] writes:
>>>>> Hi all,
>>>>>
>>>>> I was wondering - can CellML models have nested components? ?That is,
>>>>> are there instances where some model component is a component in
>>>>> another model component?
>>>>> Thanks,
>>>>
>>>> Yes--this is covered by the concept of encapsulation. ?See
>>>> http://www.cellml.org/getting-started/tutorials/tutorial/best_practice/#grouping
>>>> for more detail, but basically you set up a whole tree of nested
>>>> components, and this nesting determines the rules for how you can connect
>>>> the variables in those components.
>>>>
>>>> Also, an imported component from another file that encapsulates other
>>>> components brings those components (and corresponding connections) with
>>>> it in the import.
>>>>
>>>> Is that a reasonable summary, list denizens?
>>>
>>> yep, I think that summarises it nicely. Importing along with
>>> encapsulation allows the definition of models where some components
>>> are components from another model.
>>>
>>>
>>> Cheers,
>>> Andre.
>>>
>>>
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>>> End of cellml-discussion Digest, Vol 87, Issue 9
>>> ************************************************
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>>
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• [cellml-discussion] cellml-discussion Digest, Vol 87, Issue 10, Maxwell Neal, 10/25/2011
  • [cellml-discussion] cellml-discussion Digest, Vol 87, Issue 10, David Nickerson, 10/25/2011
    • [cellml-discussion] cellml-discussion Digest, Vol 87, Issue 10, Andrew Miller, 10/25/2011

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