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Some of you might be interested in this--JSim now has CellML output as
well as CellML input. Since JSim models themselves are not modular,
everything gets put into a single component; there is hope that in the
future when JSim itself is modular, it will be able to produce modular
CellML output. A few more details at

http://physiome.org/jsim/docs/MML_CellML.html#exporting

-Lucian

----- Forwarded message from Erik Butterworth <butterw at
bioeng.washington.edu> -----

From: Erik Butterworth <butterw at bioeng.washington.edu>
Reply-To: Erik B <butterw at u.washington.edu>
To: JSim Development -- Adam Alessio <aalessio at u.washington.edu>,
"Dr. James Caldwell" <jcald at u.washington.edu>,
Forbes Dewey <cfdewey at mit.edu>, "Huhns, Michael" <huhns at
engr.sc.edu>,
Melissa Krueger <krueger at u.washington.edu>,
Max Neal <mneal at u.washington.edu>,
David Nickerson <d.nickerson at auckland.ac.nz>,
Bart Jardine <barthj at u.washington.edu>,
Gary Raymond <garyr at u.washington.edu>,
"Dr. James Bassingthwaighte" <jbb2 at u.washington.edu>,
Lucian Smith <lpsmith at u.washington.edu>,
Rebecca Rowe <rebikah17 at gmail.com>, "Dash, Ranjan" <rdash at
mcw.edu>,
Richard Ward <wardrc1 at ornl.gov>, Herb Sauro <hsauro at
u.washington.edu>,
Andreas Schwab <andreas.schwab at staff.mcgill.ca>,
Shiva Ayyadurai <vashiva at MIT.EDU>,
Gary Ynvge <gyngve at cs.washington.edu>,
Adam Alessio <aalessio at u.washington.edu>
Subject: JSim 2.06 released
Date: Thu, 2 Feb 2012 10:01:48 -0800 (PST)
Message-ID: <Pine.LNX.4.64.1202020955210.4336 at frodo.bioeng.washington.edu>

Highlights:

o new Monte-Carlo analysis module;

o CellML output is now available;

o various bug fixes, including one in SBML import which previously
mishandled time-varying compartment volumes.

See the JSim home page for complete information on JSim, including
documentation, downloads, documentation and model repositories:

http://physiome.org/jsim/

For complete details on the latest release, click on "What's New?"

Note to QPP users: JSim 2.06 should not be used with the previous
QPP release (0.913). A new QPP release, 0.914, will be made later today
that is compatible with JSim 2.06.

Erik Butterworth butterw at uw.edu 206-685-2007
Software Engineer, University of Washington Bioengineering
http://physiome.org/~butterw/

----- End forwarded message -----

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• [cellml-discussion] (forw) JSim 2.06 released, Lucian Smith, 02/03/2012

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