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Tommy Yu
Tommy Yu
CellML Discussion List
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- From: Lucian Smith <lucianoelsmitho AT gmail.com>
- To: SBML Discussion List <sbml-discuss AT caltech.edu>, "roadrunner AT u.washington.edu" <roadrunner AT u.washington.edu>, cellml-discussion AT lists.cellml.org
- Subject: [[cellml-discussion] ] Antimony v2.5 released!
- Date: Thu, 13 Feb 2014 18:16:04 -0800
We are pleased to announce the release of version 2.5 of Antimony, the
human-readable, human-writable, model definition language, available at:
http://antimony.sourceforge.net/
Antimony defines a declarative language for biological models and provides
translators to and from SBML and CellML. Translations to SBML can include
(but do not require) the use of SBML's 'Hierarchical Model Composition'
package.
In addition, we have recently published a paper about our translation
efforts with Antimony (and JSim) in Bioinformatics:
http://bioinformatics.oxfordjournals.org/content/early/2013/11/08/bioinformatics.btt641.short
Antimony comes with:
* QTAntimony: A standalone editor
* sbtranslate: A command-line translator
* libantimony: A translation library which can be used to add an antimony
interface to your own software
and, with v2.5, we now have:
* Python bindings! These can be used to translate Antimony models from
Python, which can be particularly useful when also using python bindings
from a simulator library such as roadrunner. See
http://tellurium.analogmachine.org/ for more information.
Other updates include more robust translation to and from the SBML 'comp'
package, and more robust handling of units.
Thank you!
-Lucian Smith
- [[cellml-discussion] ] Antimony v2.5 released!, Lucian Smith, 02/14/2014
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