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Dear Cellml Developers, I'm a PhD student in Bari and I'm developing a Java
application based on the cellmlapi (cellml-sdk-1.10-Win32-MSVC10.
exe, MingW didn't worked, generating a could not load dependent libaries
exception). I need to programmatically solve a model and I got some clue
about how to do it inspecting the opencell source code. I get an exception
(Unexpected exception generating code) when calling
cis.compileModelODE(model) and I guess this is because the api need a c
compiler to compile the code. I tried to adding the following env variables
but this didn't work. Can you pls help me?
BR, thanks, Paolo

CELLML_HOME C:\Program Files (x86)\cellml-sdk-1.10_msvc
PATH C:\Program Files (x86)\OpenCell\gcc\bin;C:\Program Files
(x86)\OpenCell\gcc\libexec\gcc\mingw32\3.4.2;%CELLML_HOME%\lib
LIBRARY_PATH C:\Program Files
(x86)\OpenCell\gcc\lib\gcc\mingw32\3.4.2;C:\Program Files
(x86)\OpenCell\gcc\lib

the code i use is the following (the model is loaded properly, i can do a
getcmetaid(), I use fully instantiate imports, i can simulate the model in
opencell correctly)

System.loadLibrary("java_cis");
cis = cellml_bootstrap.CISBootstrap.createIntegrationService();
Model model = (new ModelLoader(modelfile)).getModel();
ODESolverCompiledModel oscm = cis.compileModelODE(model); >>
Exception (Unexpected exception generating code)
ODESolverRun osr = cis.createODEIntegrationRun(oscm);
osr.setStepType(ODEIntegrationStepType.BDF_IMPLICIT_1_5_SOLVE);
osr.setProgressObserver(this);
double epsAbs=1E-6, epsRel=1E-6, scalVar=1, scalRate=0, maxstep=1,
tabstepsize=0.01, startBvar=0, stopBvar=10, maxDensity=1000;
boolean tabstrict = false;
osr.setStepSizeControl(epsAbs, epsRel, scalVar, scalRate, maxstep);
osr.setTabulationStepControl(tabstepsize, tabstrict);
osr.setResultRange(startBvar, stopBvar, maxDensity);
osr.start();


--
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gain the praise I now enjoy, but chiefly from a craving after knowledge,
which I notice resides in me more than in most other men. And
wherewithal, whenever I found out anything remarkable, I have thought it my
duty to put down my discovery on paper, so that all ingenious people might
be informed thereof.?
(van Leeuwenhoek, Letter to the Royal Society, June 12 1716)

?Make it as simple as possible. But not simpler?.
(Albert Einstein)

"The best way to predict the future is to invent it".
(Alan Kay)

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• [cellml-dev] simulating model programmatically, Paolo Pannarale, 12/20/2011
  • [cellml-dev] simulating model programmatically, Alan Garny, 12/20/2011
  • [cellml-dev] simulating model programmatically, Andrew Miller, 12/20/2011

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