Chronological Thread 

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Hi everyone,

Ive been creating a few models and Importing them and such to create more
complex model.

Example :
I have 2 existing files (models) promoter-RBS_repressed and protein.
These 2 respectively contain components promoter-RBS_repressed and Protein.

promoter-RBS_repressed has an input of repressorConcentration and an output
of synthesisRate.
protein has an input of synthesisRate and an output of proteinConcentration.

I want to create a single file with input: repressor concentration and
output: protein concentration.


What I have done is to create a 3rd file : repressed_protein-generator ,
create a component : repressed_protein-generator,
create connections and groups such that variables are recieved (from other
models) by repressed protein generator and 'relayed' to
promoter-RBS_repressed and any output variables from Protein are relayed to
repressed_protein-generator which can output them.

Segments of code from repressed_protein-generator:

<group>
<relationship_ref name="repressed_protein-generator"
relationship="encapsulation"/>
<component_ref component="repressed_protein-generator">
<component_ref component="promoter-RBS_repressed"/>
<component_ref component="Protein"/>
</component_ref>
</group>
......................................................

<component name="repressed_protein-generator">

<variable name="proteinConcentration" private_interface="in"
public_interface="out" units="mole"/>
<variable name="repressorConcentration" private_interface="out"
public_interface="in" units="mole"/>

</component>
.....................................................

<connection>
<map_components component_1="repressed_protein-generator"
component_2="promoter-RBS_repressed"/>
<map_variables variable_1="repressorConcentration"
variable_2="repressorConcentration"/>
</connection>

<connection>
<map_components component_1="promoter-RBS_repressed"
component_2="Protein"/>
<map_variables variable_1="synthesisRate"
variable_2="synthesisRate"/>
</connection>

<connection>
<map_components component_1="Protein"
component_2="repressed_protein-generator"/>
<map_variables variable_1="proteinConcentration"
variable_2="proteinConcentration"/>
</connection>




My question is : Is there a better way (more natural way..) to do this in
CellML ?


Thank you.

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• [cellml-discussion] how to units make a difference to simulation, James Lawson, 08/06/2007
  • [cellml-discussion] Best Import/Encapsulation methods, ----- -----, 08/07/2007
    • [cellml-discussion] Best Import/Encapsulation methods, David Nickerson, 08/13/2007
  • [cellml-discussion] how to units make a difference to simulation, Alan Garny, 08/07/2007
    • [cellml-discussion] how to units make a difference to simulation, Alan Garny, 08/07/2007
      • [cellml-discussion] how to units make a difference to simulation, Andrew Miller, 08/07/2007
        • [cellml-discussion] how to units make a difference to simulation, Alan Garny, 08/07/2007
    • [cellml-discussion] how to units make a difference to simulation, James Lawson, 08/07/2007
      • [cellml-discussion] how to units make a difference to simulation, Alan Garny, 08/07/2007
        • [cellml-discussion] how to units make a difference to simulation, Andrew Miller, 08/07/2007
          • [cellml-discussion] how to units make a difference to simulation, Alan Garny, 08/07/2007

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