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Tommy Yu
Tommy Yu
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- From: david.nickerson at nus.edu.sg (David Nickerson)
- Subject: [cellml-discussion] decompose - a model decomposition utility
- Date: Thu, 01 May 2008 15:10:09 +0800
Hi all,
I have recently needed to revive an early CellML 1.0 model of mine which
I need to use within some more recent modelling work. The model is very
complicated it was going to take a long time to separate out the deeply
embedded parameter values and initial conditions in order to make the
model more amenable to use in a CellML 1.1 model hierarchy.
As I was feeling a bit lazy I decided instead to take a stab at writing
some code which would do this automatically for me. I have done this
(using the CellML API) and the code is now available on the CellML
sourceforge.net project. More information about it and help on how to
compile the code are available at
http://cellml.sourceforge.net/decompose/index.html - on the off chance
you look into the code, please bear in mind this was quite a rush effort
to get something working :) also, while it seems to work well on the
models I have tested it with (cellular electrophysiology), there are no
guarantees for other models...see also the limitations section on the
above web page.
Thanks,
Andre.
- [cellml-discussion] decompose - a model decomposition utility, David Nickerson, 05/01/2008
- [cellml-discussion] decompose - a model decomposition utility, Alan Garny, 05/01/2008
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