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[cellml-discussion] decompose - a model decomposition utility


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  • From: alan.garny at dpag.ox.ac.uk (Alan Garny)
  • Subject: [cellml-discussion] decompose - a model decomposition utility
  • Date: Thu, 1 May 2008 09:12:14 +0100
> I have recently needed to revive an early CellML 1.0 model of mine which
> I need to use within some more recent modelling work. The model is very
> complicated it was going to take a long time to separate out the deeply
> embedded parameter values and initial conditions in order to make the
> model more amenable to use in a CellML 1.1 model hierarchy.
>
> As I was feeling a bit lazy I decided instead to take a stab at writing
> some code which would do this automatically for me. I have done this
> (using the CellML API) and the code is now available on the CellML
> sourceforge.net project. More information about it and help on how to
> compile the code are available at
> http://cellml.sourceforge.net/decompose/index.html - on the off chance
> you look into the code, please bear in mind this was quite a rush effort
> to get something working :) also, while it seems to work well on the
> models I have tested it with (cellular electrophysiology), there are no
> guarantees for other models...see also the limitations section on the
> above web page.

I have just had a very quick look and this certainly looks very promising!
Well done!

I now wonder whether such a tool shouldn't be incorporated into PCEnv/COR
(as well as be a standalone tool). In fact, couldn't your tool become a
CellML API service (I am not sure about the right terminology here, but I
want to think you got what I mean)?

Alan



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