First login?
Lost password?
 
 
cellml-tools-developers AT lists.cellml.org 
A list for the developers of CellML tools

Text archives Help


Re: [[cellml-dev] ] Mac OS X CellML API 1.12


Chronological Thread 
  • From: Ivo Siekmann <ivo.siekmann AT unimelb.edu.au>
  • To: cellml-tools-developers AT lists.cellml.org
  • Subject: Re: [[cellml-dev] ] Mac OS X CellML API 1.12
  • Date: Wed, 07 May 2014 13:10:33 +1000
Hi Alan,

thanks a lot for your help! In the end I used the binary from the Mac OS X release and it seemed to work. I've also downloaded the current source from github, just in case.

Cheers
Ivo

On 6/05/14 5:42 pm, Alan Garny wrote:
Hi Ivo,

David mentioned the use of the CellML API in OpenCOR, but FWIW OpenCOR
doesn't use all of the CellML API, only the bits that are relevant to
OpenCOR. Anyway, and just in case, here is some information on the CellML API
is built for use in OpenCOR:
https://github.com/opencor/opencor/tree/master/src/plugins/api/CellMLAPI.

HTH, Alan.

-----Original Message-----
From:
cellml-tools-developers-request AT lists.cellml.org
[mailto:cellml-tools-
developers-request AT lists.cellml.org]
On Behalf Of Ivo Siekmann
Sent: 06 May 2014 02:47
To:
cellml-tools-developers AT lists.cellml.org
Subject: Re: [[cellml-dev] ] Mac OS X CellML API 1.12

Hi Andre,

thanks a lot for your quick reply... I hope all is fine in Auckland!
Sorry that I missed the bug tracker otherwise I'd have asked my question
there.
I'll have a look there and I'll try using the binaries from the various
sources that
you mentioned!

Cheers from Melbourne,
Ivo

On 6/05/14 10:29 am, David Nickerson wrote:
Hi Ivo,

See https://tracker.physiomeproject.org/show_bug.cgi?id=3673,
https://tracker.physiomeproject.org/show_bug.cgi?id=3671, and
https://tracker.physiomeproject.org/show_bug.cgi?id=3670 for some
recent tracker items regarding building the CellML API under OS X
10.9.

The upshot is that you should be able to build the current trunk code
(which has some fixes that are not in the 1.12 release, so I would
recommend using that), but you will not be able to build all the
tests. I have been able to build CellML2C (the code generation test)
but haven't tried the other test codes. I use clang for all
compilation/linking on OS X:
$ clang --version
Apple LLVM version 5.1 (clang-503.0.40) (based on LLVM 3.4svn)
Target: x86_64-apple-darwin13.1.0
Thread model: posix

The 1.12 binaries should work - not sure why you're getting that
error. I know I have linked my own code agains the 1.12 binaries
(using clang), but generally use my own build of the current trunk
code nowadays.

If needed, Alan Garny has the OpenCOR development environment all
nicely set up so you can probably extract the required binaries from
that source.


Cheers,
Andre.

On Mon, May 5, 2014 at 5:12 PM, Ivo Siekmann
<ivo.siekmann AT unimelb.edu.au>
wrote:
Hi CellMLers,

I'm trying to get the CellML API running on Mac and I ran into some
difficulties.

1) Compiling from source code:
a) This fails with clang (Apple LLVM version 5.1 (clang-503.0.40)),
apparently due to a forward declaration of the << operator in
TestAssert.h when attempting to build DOMTEST.cpp.o (I don't know
much about this but from some googling it seems to me that clang is
stricter about the standard than some other compilers. So it may see
errors where other compilers don't).

b) Compiling with gcc 4.8.2 goes through and passes the tests of
'CheckCodeGenerator' and 'CheckVACSS' but fails for 'RunTestBin'. I
didn't find out a lot more about how/why it failed.

2) Binaries:
I've downloaded the binaries and Mac OS X complains that the package
can't be opened "because it may be damaged or incomplete". Well, I
can open the package and look at its contents, so it may be possible
to link the libraries but I haven't tried.

Any help would be greatly appreciated.
Cheers
Ivo


Archive powered by MHonArc 2.6.18.

Top of page