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Hey, everyone! Just a note that it would be nice to have new SDKs for the
CellML API for Ubuntu 16.04--the old ones no longer work there.

It would also be nice to get SDKs for the latest versions of Visual Studio,
but that's less urgent.

Attached are the emails that Matthias and I sent earlier, but it turned out
I was only signed up under my old email address, so now I'm actually signed
up using the new one.

I believe that Matthias eventually worked through the dependencies to build
the API from source, but as noted, it was a pain.

-Lucian

On Wed, Oct 19, 2016 at 12:50 AM, Matthias König
<konigmatt AT googlemail.com>
wrote:

> I already tried to build the SDK from source but never could manage to
> make this work (dependency nightmare). I have no idea what are the third
> party dependencies are and there are so many of them.
>
> For instance trying to just build the barbone SDK via
>
> cmake -DCMAKE_RUNTIME_OUTPUT_DIRECTORY=${CELLML_BUILD} ../${API_VERSION}
>
> make all
> results in:
>
> Scanning dependencies of target cellml
> [ 1%] Building CXX object CMakeFiles/cellml.dir/sources/Utilities.cpp.o
> In file included from /home/mkoenig/tmp/cellml-api-
> 1.13/sources/Utilities.cpp:1:0:
> /home/mkoenig/tmp/cellml-api-1.13/sources/Utilities.hxx:41:26: fatal
> error: Ifacexpcom.hxx: No such file or directory
> compilation terminated.
> CMakeFiles/cellml.dir/build.make:62: recipe for target
> 'CMakeFiles/cellml.dir/sources/Utilities.cpp.o' failed
> make[2]: *** [CMakeFiles/cellml.dir/sources/Utilities.cpp.o] Error 1
> CMakeFiles/Makefile2:1176: recipe for target 'CMakeFiles/cellml.dir/all'
> failed
>
> despite cmake-gui not showing any problems.
> Looking at the SDK-build/lib directory suggests that there are around 50
> library dependencies I somehow have to get installed for building.
>
> I already fought to build the cellml SDK 2 years ago and gave up than. And
> after 1h now I am at the same point.
>
> In summary: It would be nice to have a SDK build which works on Ubuntu
> 16.04 or at least a way that one can build the SDK easily.
>
>
> On Wed, Oct 19, 2016 at 8:35 AM, Matthias König
> <konigmatt AT googlemail.com>
> wrote:
>
>> Just for information:
>> I can reproduce this problem on all my Ubuntu 16.04 machines & in docker
>> images based on Ubuntu 16.04
>> I tried linking against 1.11, 1.12 and 1.13 from here
>>
>> wget
>> https://sourceforge.net/projects/cellml-api/files/CellML-API-Nightly/1.12/20121031/linux-x86_64/${VERSION}.tar.bz2/download
>> wget
>> https://sourceforge.net/projects/cellml-api/files/CellML-API-Nightly/1.11/20120418/linux-x86_64/${VERSION}.tar.bz2/download
>> wget
>> https://sourceforge.net/projects/cellml-api/files/CellML-API-Nightly/1.13/20130716/linux-x86_64/${VERSION}.tar.bz2/download
>>
>> but none of the SDK versions works on Ubuntu 16.04.
>> I have no problems in 14.04, but it is no longer supported . The current
>> Long term support version is 16.04 LTS and cellml SDK should work on it.
>> Matthias
>>
>>
>> On Tue, Oct 18, 2016 at 11:12 PM, Lucian Smith
>> <lucianoelsmitho AT gmail.com
>> > wrote:
>>
>>> So, it turns out that in Antimony, using the now-old CellML API, calls
>>> to the CellML library error out with a SIGABRT if compiled on Ubuntu
>>> 16.04,
>>> but not when compiled on Ubuntu 14.04. This is presumably an issue with
>>> the CellML SDK.
>>>
>>> While a new CellML library would certainly be nice, I'm unlikely to have
>>> the time to update Antimony to use it any time soon, so if someone
>>> wouldn't
>>> mind looking into creating a CellML SDK for these more recent versions of
>>> Ubuntu, that'd be great.
>>>
>>> SDKs for more recent versions of Visual Studio would also be nice,
>>> though I haven't actually checked to see if they already exist ;-)
>>>
>>> Thank you!
>>>
>>> -Lucian
>>>
>>
>>
>>
>> --
>> Matthias König
>> Junior Group Leader LiSym - Systems Medicine of the Liver
>> Humboldt-University Berlin, Institute for Theoretical Biology
>> https://www.livermetabolism.com
>> konigmatt AT googlemail.com
>> Tel: +49 30 20938450
>> Tel: +49 176 81168480
>>
>
>
>
> --
> Matthias König
> Junior Group Leader LiSym - Systems Medicine of the Liver
> Humboldt-University Berlin, Institute for Theoretical Biology
> https://www.livermetabolism.com
> konigmatt AT googlemail.com
> Tel: +49 30 20938450
> Tel: +49 176 81168480
>

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• Re: [[cellml-dev] ] The CellML API on Ubuntu 16.04, Lucian Smith, 10/21/2016
  • Re: [[cellml-dev] ] The CellML API on Ubuntu 16.04, Alan Garny, 10/21/2016

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