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[cellml-discussion] Biological and other non-model citations in CellML metadata?


Chronological Thread 
  • From: matt.halstead at auckland.ac.nz (Matt )
  • Subject: [cellml-discussion] Biological and other non-model citations in CellML metadata?
  • Date: Fri, 30 Mar 2007 11:08:22 +1200
On 3/30/07, Nicolas Le Novere <lenov at ebi.ac.uk> wrote:
>
> > So there is no simple way to determine if this is a reference to a
> > journal article except through interpreting the URI?
>
> Exactly. But this interpretation is unambiguous, so this is not a problem.
> This does not require more work than parsing an XML element
> <bqs:PubMed_id>, with the exception that you do not need to change your
> format each time you need to refer to another bibliographic resource, such
> as creating an element <bqs:ArXiv_id>. You just add an entry to MIRIAM
> database.
>
> I do not think there is anything simpler to determine it is a reference to
> a journal article. Whatever you decide, you will always need a lookup
> table somewhere that says "this metadata is a bibliographic reference".

In those cases, for example bqs, where the object of the reference is
indeterminate or not of interest, it would be helpful to be able to
filter metadata without having to have knowledge of the values (in
this case reference URI schemes or identifiers) to determine the type
of metadata property you are dealing with.

Are you suggesting every processor of SBML metadata need to iterate
over all isDescribedBy predicates and evaluate the objects of these
and reverse engineer these back into some knowledge of what kind of
description this is?


cheers
Matt



>
>
>
> --
> Nicolas LE NOVERE, Computational Neurobiology,
> EMBL-EBI, Wellcome-Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
> Tel: +44(0)1223494521, Fax: +44(0)1223494468, Mob: +44(0)7833147074
> http://www.ebi.ac.uk/~lenov, AIM:nlenovere, MSN:nlenovere at hotmail.com
>
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