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[cellml-discussion] CellML OWL work in progress


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  • From: ely.matos at ufjf.edu.br (Ely Edison Matos)
  • Subject: [cellml-discussion] CellML OWL work in progress
  • Date: Thu, 4 Sep 2008 23:17:42 -0300
Hi Sarala,
Thanks for the answer and news :-)
CelO has a similar goal, except the "visual" subject (not covered on my
work). And it is possible to use SWRL to "infer" some knowledge from the
CellML Model.
I'll wait with expectation for the drafts :-)

[]'s
Ely


----- Original Message -----
From: "Sarala Dissanayake" <sarala.dissanayake at auckland.ac.nz>
To: "CellML Discussion List" <cellml-discussion at cellml.org>
Sent: Thursday, September 04, 2008 5:32 AM
Subject: [cellml-discussion] CellML OWL work in progress


> Hi Randy and Ely,
>
> I'm developing a framework for annotating and visualizing CellML models.
> A solution has been developed that involves:
> - an ontology for storing CellML models in OWL format (CellMLOWL) and a
> set of rules for binding these CellMLOWL instances to CellML models.
> - an ontology which represents biophysical and biological concepts that
> are covered in CellML models (CellMLBio) and a set of rules for binding
> these concepts to CellMLOWL models;
> - a specification for building visual templates that support a visual
> language that can be used to represent all biophysical and biological
> processes covered in CellMLBio ontology and the rules for binding the
> visual language to concepts within the CellMLBio ontology;
> - a visual editing tool, that combines the visual language and ontologies
> to visualize CellML models.
>
> I'm currently writing up my thesis and 3 papers. I should be able to make
> these available to you in draft form soon.
>
> Cheers,
> Sarala
>
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