- From: heiland at indiana.edu (Randy Heiland)
- Subject: [cellml-discussion] CellML OWL work in progress
- Date: Sat, 6 Sep 2008 07:50:11 -0400
Thanks for the reply, Sarala. I/we look forward to your drafts.
best, Randy
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Date: September 4, 2008 8:00:01 PM EDT
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Subject: cellml-discussion Digest, Vol 50, Issue 4
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Today's Topics:
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1. CellML OWL work in progress (Sarala Dissanayake)
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Message: 1
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Date: Thu, 04 Sep 2008 20:32:33 +1200
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From: Sarala Dissanayake <sarala.dissanayake at auckland.ac.nz>
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Subject: [cellml-discussion] CellML OWL work in progress
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To: CellML Discussion List <cellml-discussion at cellml.org>
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Message-ID:
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<20080904203233.ui1ruzjkoc4oc00s at webmail.bioeng.auckland.ac.nz>
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Hi Randy and Ely,
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I'm developing a framework for annotating and visualizing CellML
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models. A solution has been developed that involves:
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- an ontology for storing CellML models in OWL format (CellMLOWL) and
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a set of rules for binding these CellMLOWL instances to CellML models.
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- an ontology which represents biophysical and biological concepts
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that are covered in CellML models (CellMLBio) and a set of rules for
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binding these concepts to CellMLOWL models;
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- a specification for building visual templates that support a visual
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language that can be used to represent all biophysical and biological
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processes covered in CellMLBio ontology and the rules for binding the
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visual language to concepts within the CellMLBio ontology;
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- a visual editing tool, that combines the visual language and
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ontologies to visualize CellML models.
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I'm currently writing up my thesis and 3 papers. I should be able to
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make these available to you in draft form soon.
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Cheers,
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Sarala
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