Chronological Thread 

< Chronological >      < Thread >

---

Hi all,
Please find the PDF attachment on tracker for the same topic
https://tracker.physiomeproject.org/show_bug.cgi?id=1464
else, I am attaching the PDF document again
regards
Abhishek
cellml-discussion-request at cellml.org wrote:
> Send cellml-discussion mailing list submissions to
> cellml-discussion at cellml.org
>
> To subscribe or unsubscribe via the World Wide Web, visit
> http://www.cellml.org/mailman/listinfo/cellml-discussion
> or, via email, send a message with subject or body 'help' to
> cellml-discussion-request at cellml.org
>
> You can reach the person managing the list at
> cellml-discussion-owner at cellml.org
>
> When replying, please edit your Subject line so it is more specific
> than "Re: Contents of cellml-discussion digest..."
>
>
> Today's Topics:
>
> 1. Re: [Fwd: Visual model design and editing capabilities for
> CellML] (Michael Cooling)
> 2. Re: [Fwd: Visual model design and editing capabilities for
> CellML] (James Lawson)
> 3. Re: [Fwd: Visual model design and editing capabilities for
> CellML] (Sarala Dissanayake)
> 4. Re: [Fwd: Visual model design and editing capabilities for
> CellML] (James Lawson)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Thu, 30 Oct 2008 14:50:18 +1300
> From: Michael Cooling <m.cooling at auckland.ac.nz>
> Subject: Re: [cellml-discussion] [Fwd: Visual model design and
> editing
> capabilities for CellML]
> To: cellml-discussion at cellml.org
> Message-ID:
> <20081030145018.uso4h1diqsgk0k8o at webmail.bioeng.auckland.ac.nz>
> Content-Type: text/plain; charset=ISO-8859-1; DelSp="Yes";
> format="flowed"
>
> ooo
>
> something close to my heart
>
> but unfortunately Abhishek I can't seem to open your document...hope
> it's not my machine...?
>
> Regards,
>
> Mike Cooling, PhD
> Research Fellow
> Auckland Bioengineering Institute
> New Zealand
> http://www.bioeng.auckland.ac.nz/people/mcoo001
>
>
>
> Quoting Andrew Miller <ak.miller at auckland.ac.nz>:
>
>
>> Forwarding to cellml-discussion as this is the most appropriate mailing
>> list.
>>
>> -------- Original Message --------
>> Subject: Visual model design and editing capabilities for CellML
>> Date: Thu, 30 Oct 2008 14:03:14 +1300
>> From: Abhishek Tiwari <a.tiwari at auckland.ac.nz>
>> To: team at cellml.org, Andrew Miller <ak.miller at auckland.ac.nz>, David
>> Nickerson <david.nickerson at gmail.com>
>>
>>
>>
>> Hi all,
>> Here I am attaching a proposal document "Visual model design and
>> editing capabilities for CellML", which I created long back and only
>> few of you have accessed the document. The document is more like a
>> conceptual sketch of how we can make CellML tools more user friendly
>> and versatile. I don't claim that this will be very useful for CellML
>> team especially when document is incomplete, but it can convey the
>> concepts and requirements. In recent there have been a lot of
>> discussion about metadata specification roadmap and I thought this
>> would be appropriate time to get feedback from CellML team and other
>> users, as concept describe in document may need some extended versions
>> of these specifications. To develop a visual model design and editing
>> capabilities for CellML, we need
>> 1) Defined set of symbols for network diagrams, like SBGN or Edinburgh
>> Pathway Notation but more optimized for CellML. (Do we need CellML
>> sepcific visual notations or we should fallow existing standards ? )
>> 2) Model visual representation metadata specification (updated
>> http://www.cellml.org/Members/jlaw060/cellml-metadata-roadmap/), it
>> will be closely related with visual notation system we select for
>> CellML tools
>> The terms, definition and other requirements mentioned in proposal are
>> not standard at all, and open for comments and feedbacks.
>>
>> thanks for valuable time and comments/suggestions.
>> Abhishek
>>
>
>
>
> ----------------------------------------------------------------
> This message was sent using IMP, the Internet Messaging Program.
>
>
>
> ------------------------------
>
> Message: 2
> Date: Thu, 30 Oct 2008 14:58:30 +1300
> From: James Lawson <j.lawson at auckland.ac.nz>
> Subject: Re: [cellml-discussion] [Fwd: Visual model design and
> editing
> capabilities for CellML]
> To: CellML Discussion List <cellml-discussion at cellml.org>
> Message-ID: <490914C6.4080801 at auckland.ac.nz>
> Content-Type: text/plain; charset="iso-8859-1"; Format="flowed"
>
> Likewise. Would be very interested to read this though.
>
> Thanks,
> James
>
> Michael Cooling wrote:
>
>> ooo
>>
>> something close to my heart
>>
>> but unfortunately Abhishek I can't seem to open your document...hope
>> it's not my machine...?
>>
>> Regards,
>>
>> Mike Cooling, PhD
>> Research Fellow
>> Auckland Bioengineering Institute
>> New Zealand
>> http://www.bioeng.auckland.ac.nz/people/mcoo001
>>
>>
>>
>> Quoting Andrew Miller <ak.miller at auckland.ac.nz>:
>>
>>
>>> Forwarding to cellml-discussion as this is the most appropriate
>>> mailing list.
>>>
>>> -------- Original Message --------
>>> Subject: Visual model design and editing capabilities for CellML
>>> Date: Thu, 30 Oct 2008 14:03:14 +1300
>>> From: Abhishek Tiwari <a.tiwari at auckland.ac.nz>
>>> To: team at cellml.org, Andrew Miller <ak.miller at auckland.ac.nz>,
>>> David
>>> Nickerson <david.nickerson at gmail.com>
>>>
>>>
>>>
>>> Hi all,
>>> Here I am attaching a proposal document "Visual model design and
>>> editing capabilities for CellML", which I created long back and only
>>> few of you have accessed the document. The document is more like a
>>> conceptual sketch of how we can make CellML tools more user friendly
>>> and versatile. I don't claim that this will be very useful for CellML
>>> team especially when document is incomplete, but it can convey the
>>> concepts and requirements. In recent there have been a lot of
>>> discussion about metadata specification roadmap and I thought this
>>> would be appropriate time to get feedback from CellML team and other
>>> users, as concept describe in document may need some extended versions
>>> of these specifications. To develop a visual model design and editing
>>> capabilities for CellML, we need
>>> 1) Defined set of symbols for network diagrams, like SBGN or Edinburgh
>>> Pathway Notation but more optimized for CellML. (Do we need CellML
>>> sepcific visual notations or we should fallow existing standards ? )
>>> 2) Model visual representation metadata specification (updated
>>> http://www.cellml.org/Members/jlaw060/cellml-metadata-roadmap/), it
>>> will be closely related with visual notation system we select for
>>> CellML tools
>>> The terms, definition and other requirements mentioned in proposal are
>>> not standard at all, and open for comments and feedbacks.
>>>
>>> thanks for valuable time and comments/suggestions.
>>> Abhishek
>>>
>>
>> ----------------------------------------------------------------
>> This message was sent using IMP, the Internet Messaging Program.
>>
>> _______________________________________________
>> cellml-discussion mailing list
>> cellml-discussion at cellml.org
>> http://www.cellml.org/mailman/listinfo/cellml-discussion
>>
>
> -------------- next part --------------
> A non-text attachment was scrubbed...
> Name: j_lawson.vcf
> Type: text/x-vcard
> Size: 278 bytes
> Desc: not available
> URL:
> <http://www.cellml.org/pipermail/cellml-discussion/attachments/20081030/32e082b4/attachment-0001.vcf>
>
> ------------------------------
>
> Message: 3
> Date: Thu, 30 Oct 2008 15:03:49 +1300
> From: Sarala Dissanayake <sarala.dissanayake at auckland.ac.nz>
> Subject: Re: [cellml-discussion] [Fwd: Visual model design and
> editing
> capabilities for CellML]
> To: cellml-discussion at cellml.org
> Message-ID:
> <20081030150349.osqfiq5bacw4c8s8 at webmail.bioeng.auckland.ac.nz>
> Content-Type: text/plain; charset=ISO-8859-1; DelSp="Yes";
> format="flowed"
>
> Hi Abhishek,
>
> I can't seem to open the file either.
>
> However, I'm working on visualization of CellML models. I've already
> looked at using existing notations to visualize CellML models.
> Currently I have my own notation and I'm also looking at using SBGN.
> I've developed a work flow to annotate and visualise CellML models. So
> I'm not quite sure how this work is going to be different (ref last
> paragraph on the CellML metadata road map page).
>
> Please let me know if you want to know more about what I'm working on.
>
> Cheers,
> Sarala
>
> Quoting Andrew Miller <ak.miller at auckland.ac.nz>:
>
>
>> Forwarding to cellml-discussion as this is the most appropriate mailing
>> list.
>>
>> -------- Original Message --------
>> Subject: Visual model design and editing capabilities for CellML
>> Date: Thu, 30 Oct 2008 14:03:14 +1300
>> From: Abhishek Tiwari <a.tiwari at auckland.ac.nz>
>> To: team at cellml.org, Andrew Miller <ak.miller at auckland.ac.nz>, David
>> Nickerson <david.nickerson at gmail.com>
>>
>>
>>
>> Hi all,
>> Here I am attaching a proposal document "Visual model design and
>> editing capabilities for CellML", which I created long back and only
>> few of you have accessed the document. The document is more like a
>> conceptual sketch of how we can make CellML tools more user friendly
>> and versatile. I don't claim that this will be very useful for CellML
>> team especially when document is incomplete, but it can convey the
>> concepts and requirements. In recent there have been a lot of
>> discussion about metadata specification roadmap and I thought this
>> would be appropriate time to get feedback from CellML team and other
>> users, as concept describe in document may need some extended versions
>> of these specifications. To develop a visual model design and editing
>> capabilities for CellML, we need
>> 1) Defined set of symbols for network diagrams, like SBGN or Edinburgh
>> Pathway Notation but more optimized for CellML. (Do we need CellML
>> sepcific visual notations or we should fallow existing standards ? )
>> 2) Model visual representation metadata specification (updated
>> http://www.cellml.org/Members/jlaw060/cellml-metadata-roadmap/), it
>> will be closely related with visual notation system we select for
>> CellML tools
>> The terms, definition and other requirements mentioned in proposal are
>> not standard at all, and open for comments and feedbacks.
>>
>> thanks for valuable time and comments/suggestions.
>> Abhishek
>>
>
>
>
> ----------------------------------------------------------------
> This message was sent using IMP, the Internet Messaging Program.
>
>
>
> ------------------------------
>
> Message: 4
> Date: Thu, 30 Oct 2008 16:05:24 +1300
> From: James Lawson <j.lawson at auckland.ac.nz>
> Subject: Re: [cellml-discussion] [Fwd: Visual model design and editing
> capabilities for CellML]
> To: CellML Discussion List <cellml-discussion at cellml.org>
> Message-ID: <49092474.7080407 at auckland.ac.nz>
> Content-Type: text/plain; charset="iso-8859-1"; Format="flowed"
>
> Attached is a version of the document that is readable
>
> Andrew Miller wrote:
>
>> Forwarding to cellml-discussion as this is the most appropriate
>> mailing list.
>>
>> -------- Original Message --------
>> Subject: Visual model design and editing capabilities for CellML
>> Date: Thu, 30 Oct 2008 14:03:14 +1300
>> From: Abhishek Tiwari <a.tiwari at auckland.ac.nz>
>> To: team at cellml.org, Andrew Miller <ak.miller at auckland.ac.nz>,
>> David Nickerson <david.nickerson at gmail.com>
>>
>>
>>
>> Hi all,
>> Here I am attaching a proposal document "Visual model design and
>> editing capabilities for CellML", which I created long back and only
>> few of you have accessed the document. The document is more like a
>> conceptual sketch of how we can make CellML tools more user friendly
>> and versatile. I don't claim that this will be very useful for CellML
>> team especially when document is incomplete, but it can convey the
>> concepts and requirements. In recent there have been a lot of
>> discussion about metadata specification roadmap and I thought this
>> would be appropriate time to get feedback from CellML team and other
>> users, as concept describe in document may need some extended versions
>> of these specifications. To develop a visual model design and editing
>> capabilities for CellML, we need
>> 1) Defined set of symbols for network diagrams, like SBGN or Edinburgh
>> Pathway Notation but more optimized for CellML. (Do we need CellML
>> sepcific visual notations or we should fallow existing standards ? )
>> 2) Model visual representation metadata specification (updated
>> http://www.cellml.org/Members/jlaw060/cellml-metadata-roadmap/), it
>> will be closely related with visual notation system we select for
>> CellML tools
>> The terms, definition and other requirements mentioned in proposal are
>> not standard at all, and open for comments and feedbacks.
>>
>> thanks for valuable time and comments/suggestions.
>> Abhishek
>>
>>
>> ------------------------------------------------------------------------
>>
>> _______________________________________________
>> cellml-discussion mailing list
>> cellml-discussion at cellml.org
>> http://www.cellml.org/mailman/listinfo/cellml-discussion
>>
>>
>
> -------------- next part --------------
> A non-text attachment was scrubbed...
> Name: visual_cellml_editor.pdf
> Type: application/pdf
> Size: 908000 bytes
> Desc: not available
> URL:
> <http://www.cellml.org/pipermail/cellml-discussion/attachments/20081030/f652a5c1/attachment.pdf>
> -------------- next part --------------
> A non-text attachment was scrubbed...
> Name: j_lawson.vcf
> Type: text/x-vcard
> Size: 278 bytes
> Desc: not available
> URL:
> <http://www.cellml.org/pipermail/cellml-discussion/attachments/20081030/f652a5c1/attachment.vcf>
>
> ------------------------------
>
> _______________________________________________
> cellml-discussion mailing list
> cellml-discussion at cellml.org
> http://www.cellml.org/mailman/listinfo/cellml-discussion
>
>
> End of cellml-discussion Digest, Vol 51, Issue 14
> *************************************************
>

-------------- next part --------------
A non-text attachment was scrubbed...
Name: VisualDesigne2nd.pdf
Type: application/pdf
Size: 908000 bytes
Desc: not available
URL:
<http://www.cellml.org/pipermail/cellml-discussion/attachments/20081030/e82bac23/attachment-0001.pdf>

---

• [cellml-discussion] cellml-discussion Digest, Vol 51, Issue 14, Abhishek Tiwari, 10/30/2008

---

Archive powered by MHonArc 2.6.18.