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[cellml-discussion] [Fwd: Visual model design and editing capabilities for CellML]


Chronological Thread 
  • From: mhucka at caltech.edu (Michael Hucka)
  • Subject: [cellml-discussion] [Fwd: Visual model design and editing capabilities for CellML]
  • Date: Wed, 29 Oct 2008 20:24:06 -0700

Whoaaah. The notation shown in Figure 5 of this document as
the "SBGN" draft is not SBGN. It was CellDesigner notation,
and is significantly different from what SBGN is now.

The current specification on sbgn.org includes a one-page
summary of the process diagram notation. Please make sure
to use that, and not figure 5, when making any evaluation of
SBGN :-).

(This is not a criticism and I'm not trying to be picky; I
only want to clarify this one point because it can be
potentially important in a decision about choice of
notations. I know it's hard to track what's going on in
different efforts, and that this document is several months
old.)

MH

P.S. As far as I'm aware, EPE (Edinburgh Pathway Editor) is
in the process of switching to SBGN, so the EPN notation may
be becoming a bit irrelevant.





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