- From: j.lawson at auckland.ac.nz (James Lawson)
- Subject: [cellml-discussion] [Fwd: Visual model design and editing capabilities for CellML]
- Date: Thu, 30 Oct 2008 16:05:24 +1300
Attached is a version of the document that is readable
Andrew Miller wrote:
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Forwarding to cellml-discussion as this is the most appropriate
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mailing list.
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-------- Original Message --------
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Subject: Visual model design and editing capabilities for CellML
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Date: Thu, 30 Oct 2008 14:03:14 +1300
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From: Abhishek Tiwari <a.tiwari at auckland.ac.nz>
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To: team at cellml.org, Andrew Miller <ak.miller at auckland.ac.nz>,
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David Nickerson <david.nickerson at gmail.com>
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Hi all,
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Here I am attaching a proposal document "Visual model design and
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editing capabilities for CellML", which I created long back and only
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few of you have accessed the document. The document is more like a
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conceptual sketch of how we can make CellML tools more user friendly
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and versatile. I don't claim that this will be very useful for CellML
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team especially when document is incomplete, but it can convey the
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concepts and requirements. In recent there have been a lot of
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discussion about metadata specification roadmap and I thought this
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would be appropriate time to get feedback from CellML team and other
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users, as concept describe in document may need some extended versions
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of these specifications. To develop a visual model design and editing
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capabilities for CellML, we need
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1) Defined set of symbols for network diagrams, like SBGN or Edinburgh
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Pathway Notation but more optimized for CellML. (Do we need CellML
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sepcific visual notations or we should fallow existing standards ? )
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2) Model visual representation metadata specification (updated
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http://www.cellml.org/Members/jlaw060/cellml-metadata-roadmap/), it
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will be closely related with visual notation system we select for
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CellML tools
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The terms, definition and other requirements mentioned in proposal are
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not standard at all, and open for comments and feedbacks.
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thanks for valuable time and comments/suggestions.
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Abhishek
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------------------------------------------------------------------------
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