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[cellml-discussion] CellML2Dot


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  • From: david.nickerson at nus.edu.sg (David Nickerson)
  • Subject: [cellml-discussion] CellML2Dot
  • Date: Thu, 28 Jun 2007 09:51:17 +0800


> I ran cmake -i (wizard mode) and it gave the following output:
>
> "jlaw060 at bioeng78:~/usr/CellML2Dot$ cmake -i
> Would you like to see advanced options? [No]:no
> Please wait while cmake processes CMakeLists.txt files....
>
> CMake Error: Error in cmake code at
> /people/jlaw060/usr/CellML2Dot/FindCellML.cmake:67:
> MESSAGE Could not find CellML

this very descriptive message is saying that it can't find the CellML
API library and include files. If you look in the BUILD file it gives an
example of how to make a debug and/or release (optimised) version of
CellML2Dot - you need to set the CMAKE_INCLUDE_PATH and
CMAKE_LIBRARY_PATH to point to where you have the CellML API installed.
Alternatively, you can use the wizard to manually enter
CELLML_INCLUDE_DIR and CELLML_LIBRARY.

> Current CMake stack:
> /people/jlaw060/usr/CellML2Dot/CMakeLists.txt;/usr/share/CMake/Modules/CMakeCInformation.cmake;/usr/share/CMake/Modules/CMakeCXXInformation.cmake;/people/jlaw060/usr/CellML2Dot/FindCellML.cmake
>
>
> Variable Name: CELLML_INCLUDE_DIR
> Description: Path to a file.
> Current Value: CELLML_INCLUDE_DIR-NOTFOUND
> New Value (Enter to keep current value):
>
> Variable Name: CELLML_LIBRARY
> Description: Path to a library.
> Current Value: CELLML_LIBRARY-NOTFOUND
> New Value (Enter to keep current value):
>
> Variable Name: CMAKE_BACKWARDS_COMPATIBILITY
> Description: For backwards compatibility, what version of CMake commands
> and syntax should this version of CMake allow.
> Current Value: 2.4
> New Value (Enter to keep current value):
>
> Variable Name: CMAKE_BUILD_TYPE
> Description: Choose the type of build, options are: None(CMAKE_CXX_FLAGS
> or CMAKE_C_FLAGS used) Debug Release RelWithDebInfo MinSizeRel.
> Current Value:
> New Value (Enter to keep current value):
>
> Variable Name: CMAKE_INSTALL_PREFIX
> Description: Install path prefix, prepended onto install directories.
> Current Value: /usr/local
> New Value (Enter to keep current value):
>
> Variable Name: EXECUTABLE_OUTPUT_PATH
> Description: Single output directory for building all executables.
> Current Value:
> New Value (Enter to keep current value):
>
> Variable Name: LIBRARY_OUTPUT_PATH
> Description: Single output directory for building all libraries.
> Current Value:
> New Value (Enter to keep current value):
>
> Please wait while cmake processes CMakeLists.txt files....
> "
>
> David Nickerson wrote:
>> Hi James,
>>
>> James Lawson wrote:
>>> Hi Andre,
>>>
>>> In the workshop you showed us a slide of a program you'd made for
>>> debugging models that showed all the connections etc. Is this that
>>> program? I tried to get the source off subversion but it didn't work. Do
>>> you have any tips on getting this tool to work?
>> do you mean that you were unable to get the source out of the
>> SourceForge subversion server or that you were unable to build it? I
>> just checked the command on the cellml.sourceforge.net page (svn
>> checkout
>> https://cellml.svn.sourceforge.net/svnroot/cellml/CellML2Dot/trunk
>> CellML2Dot) and it worked fine for me.
>>
>> If its building thats causing grief, then its probably one of the many
>> dependencies that is missing. Hopefully the cmake process will tell you
>> what it can't find, otherwise I really need to get around to writing
>> some documentation....
>>
>> oh, and yes, that is that program :)
>>
>>
>> Andre.
>> _______________________________________________
>> cellml-discussion mailing list
>> cellml-discussion at cellml.org
>> http://www.cellml.org/mailman/listinfo/cellml-discussion
>
> _______________________________________________
> cellml-discussion mailing list
> cellml-discussion at cellml.org
> http://www.cellml.org/mailman/listinfo/cellml-discussion

--
David Nickerson, PhD
Research Fellow
Division of Bioengineering
Faculty of Engineering
National University of Singapore
Email: david.nickerson at nus.edu.sg


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