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[cellml-discussion] cellml poster for ICSB 2007 conference


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  • From: j.lawson at auckland.ac.nz (James Lawson)
  • Subject: [cellml-discussion] cellml poster for ICSB 2007 conference
  • Date: Thu, 30 Aug 2007 14:36:31 +1200
Andrew Miller wrote:

Thanks Andrew - this was helpful.

> James Lawson wrote:
>> Dear CellML community,
>>
>> As promised, here is a draft for an abstract for a poster I am creating
>> for the ICSB (international conference on systems biology.) The scope of
>> the poster was outlined in the previous email in this thread. The
>> abstract is attached and is close to the 500 max word limit stipulated.
>>
>> I am sure there will be many opinions on what should be in this. One of
>> the main questions is: will these people know what cellML is? Because if
>> so I don't have to explain it so much.
>>
> 1) Lower case 'c' in 'cellML': The usual spelling is CellML.

The logo uses 'cellML' - I guess the person to ask is Poul, but I'll use
'CellML' for now.

> 2) Grammar nit: "can be embedded in electrophysiological models cardiac
> cells in CellML"
> 3) "and distribution of models biological models"

These were typos. I don't make grammar mistakes :)

> 4) " /cellml tools"/ - case

? Are you referring to the URL?

> 5) "powerful, open source software tools" => Beware of the political
> implications of how you write open source vs Open Source vs Free vs Free
> / Open Source. I recommend Free / Open Source as the most diplomatic.

Okay changed to "free / open source"

> 6) " There are plans for simulation software to be integrated with the
> cellml.org repository" => This is not clear given that we already allow
> PCEnv to be opened from the repository. Perhaps this should discuss the
> production of a stable web service for allowing editing and tools to
> programmatically query and modify the repository.
> "and for development of new APIs for SVG diagram representation of
> signalling pathways in simulation tools." => The API has been
> implemented, we just don't have any SVG diagrams. Perhaps focus on the
> concept of embedding diagrams that interact with the simulation software
> (a mention of Sarala's visualisation work would also fit here if Sarala
> is happy with this).

Have a look what I've written here. Its hard to describe what we want to
do with PCEnv in a hundred words so if you have any more tips I'm all ears.

File attached again.

>
> Best regards,
> Andrew
>> Thanks,
>> James
>>
>> James Lawson wrote:
>>
>>> Dear All,
>>>
>>> I am going to be making a poster for the ICSB 2007 conference. This has
>>> been a recent decision and as such I do not have much time until the
>>> abstract is due - September 1st.
>>>
>>> I will have a draft abstract by the end of the day which I will send to
>>> the list.
>>>
>>> The scope of this poster will be the current status of CellML and its
>>> surrounding community, website and tools. Ideas for the future of CellML
>>> and associated projects will also be represented.
>>>
>>> Images will likely include:
>>>
>>> a screenshot of Tommy's metadata editor
>>>
>>> a screenshot of COR in editing mode
>>>
>>> a screenshot of PCEnv running a session for a biochemical pathway model
>>>
>>> a screenshot of a model page and associated model documentation
>>>
>>> The same model will be used throughout and will probably be one of the
>>> Leloup 2003 or 2004 models that Catherine has recently worked on. A
>>> biochemical pathway model has been chosen due to the subject nature of
>>> the conference.
>>>
>>> The idea to make this poster was originally mine, but Edmund Crampin has
>>> taken an interest and the poster has been discussed with both him and
>>> Peter Hunter, and as of today, those members of the CellML team present
>>> at the Auckland meeting. The poster was originally to be centered around
>>> curation of the models in the repository, but following today's Auckland
>>> CellML meeting, I have decided to widen the scope.
>>>
>>> I will not be attending the conference, but Edmund and Mike Cooling have
>>> kindly agreed to attend the poster. Sarala is also thinking of
>>> submitting a poster, so having three posters about CellML will be great.
>>>
>>> The Auckland team has been very forthcoming with comments and help, and
>>> of course, input from the CellML community would be appreciated.
>>>
>>> The essence here is that we (CellML) need representation at this
>>> conference, and, for that matter, systems biology conferences in the
>>> future, so this poster is designed to widen awareness of the CellML
>>> project. With respect to this particular conference, an emphasis will be
>>> placed on how CellML can be used for modelling of biochemical pathways.
>>> Mike's poster will hopefully be next to mine and will provide a direct
>>> example of this capability.
>>>
>>> Kind regards,
>>> James Lawson
>>> _______________________________________________
>>> cellml-discussion mailing list
>>> cellml-discussion at cellml.org
>>> http://www.cellml.org/mailman/listinfo/cellml-discussion
>>>
>>> ------------------------------------------------------------------------
>>>
>>> _______________________________________________
>>> cellml-discussion mailing list
>>> cellml-discussion at cellml.org
>>> http://www.cellml.org/mailman/listinfo/cellml-discussion
>
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