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[cellml-discussion] cellml poster for ICSB 2007 conference


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  • From: j.lawson at auckland.ac.nz (James Lawson)
  • Subject: [cellml-discussion] cellml poster for ICSB 2007 conference
  • Date: Thu, 30 Aug 2007 14:38:10 +1200
Not sure what format I saved that last file in - I'm using the windows
word XP format, and I don't think Penny could read my last file. Here's
another attachment.

James Lawson wrote:
> Andrew Miller wrote:
>
> Thanks Andrew - this was helpful.
>
>> James Lawson wrote:
>>> Dear CellML community,
>>>
>>> As promised, here is a draft for an abstract for a poster I am creating
>>> for the ICSB (international conference on systems biology.) The scope of
>>> the poster was outlined in the previous email in this thread. The
>>> abstract is attached and is close to the 500 max word limit stipulated.
>>>
>>> I am sure there will be many opinions on what should be in this. One of
>>> the main questions is: will these people know what cellML is? Because if
>>> so I don't have to explain it so much.
>>>
>> 1) Lower case 'c' in 'cellML': The usual spelling is CellML.
>
> The logo uses 'cellML' - I guess the person to ask is Poul, but I'll use
> 'CellML' for now.
>
>> 2) Grammar nit: "can be embedded in electrophysiological models cardiac
>> cells in CellML"
>> 3) "and distribution of models biological models"
>
> These were typos. I don't make grammar mistakes :)
>
>> 4) " /cellml tools"/ - case
>
> ? Are you referring to the URL?
>
>> 5) "powerful, open source software tools" => Beware of the political
>> implications of how you write open source vs Open Source vs Free vs Free
>> / Open Source. I recommend Free / Open Source as the most diplomatic.
>
> Okay changed to "free / open source"
>
>> 6) " There are plans for simulation software to be integrated with the
>> cellml.org repository" => This is not clear given that we already allow
>> PCEnv to be opened from the repository. Perhaps this should discuss the
>> production of a stable web service for allowing editing and tools to
>> programmatically query and modify the repository.
>> "and for development of new APIs for SVG diagram representation of
>> signalling pathways in simulation tools." => The API has been
>> implemented, we just don't have any SVG diagrams. Perhaps focus on the
>> concept of embedding diagrams that interact with the simulation software
>> (a mention of Sarala's visualisation work would also fit here if Sarala
>> is happy with this).
>
> Have a look what I've written here. Its hard to describe what we want to
> do with PCEnv in a hundred words so if you have any more tips I'm all ears.
>
> File attached again.
>
>> Best regards,
>> Andrew
>>> Thanks,
>>> James
>>>
>>> James Lawson wrote:
>>>
>>>> Dear All,
>>>>
>>>> I am going to be making a poster for the ICSB 2007 conference. This has
>>>> been a recent decision and as such I do not have much time until the
>>>> abstract is due - September 1st.
>>>>
>>>> I will have a draft abstract by the end of the day which I will send to
>>>> the list.
>>>>
>>>> The scope of this poster will be the current status of CellML and its
>>>> surrounding community, website and tools. Ideas for the future of CellML
>>>> and associated projects will also be represented.
>>>>
>>>> Images will likely include:
>>>>
>>>> a screenshot of Tommy's metadata editor
>>>>
>>>> a screenshot of COR in editing mode
>>>>
>>>> a screenshot of PCEnv running a session for a biochemical pathway model
>>>>
>>>> a screenshot of a model page and associated model documentation
>>>>
>>>> The same model will be used throughout and will probably be one of the
>>>> Leloup 2003 or 2004 models that Catherine has recently worked on. A
>>>> biochemical pathway model has been chosen due to the subject nature of
>>>> the conference.
>>>>
>>>> The idea to make this poster was originally mine, but Edmund Crampin has
>>>> taken an interest and the poster has been discussed with both him and
>>>> Peter Hunter, and as of today, those members of the CellML team present
>>>> at the Auckland meeting. The poster was originally to be centered around
>>>> curation of the models in the repository, but following today's Auckland
>>>> CellML meeting, I have decided to widen the scope.
>>>>
>>>> I will not be attending the conference, but Edmund and Mike Cooling have
>>>> kindly agreed to attend the poster. Sarala is also thinking of
>>>> submitting a poster, so having three posters about CellML will be great.
>>>>
>>>> The Auckland team has been very forthcoming with comments and help, and
>>>> of course, input from the CellML community would be appreciated.
>>>>
>>>> The essence here is that we (CellML) need representation at this
>>>> conference, and, for that matter, systems biology conferences in the
>>>> future, so this poster is designed to widen awareness of the CellML
>>>> project. With respect to this particular conference, an emphasis will be
>>>> placed on how CellML can be used for modelling of biochemical pathways.
>>>> Mike's poster will hopefully be next to mine and will provide a direct
>>>> example of this capability.
>>>>
>>>> Kind regards,
>>>> James Lawson
>>>> _______________________________________________
>>>> cellml-discussion mailing list
>>>> cellml-discussion at cellml.org
>>>> http://www.cellml.org/mailman/listinfo/cellml-discussion
>>>>
>>>> ------------------------------------------------------------------------
>>>>
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>
>
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>
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