First login?
Lost password?
 
 
cellml-discussion AT lists.cellml.org 
CellML Discussion List

Text archives Help


[cellml-discussion] Some of the CellML not working in OpenCOR


Chronological Thread 
  • From: Aroli Marcellinus <aroli.marcellinus AT gmail.com>
  • To: cellml-discussion AT cellml.org
  • Cc: Alan Garny <alan.garny AT inria.fr>
  • Subject: [cellml-discussion] Some of the CellML not working in OpenCOR
  • Date: Wed, 2 Aug 2017 15:34:51 +0900
  • Authentication-results: mx3.auckland.ac.nz; spf=Pass smtp.mailfrom=aroli.marcellinus AT gmail.com; dkim=pass (signature verified) header.i=@gmail.com; dmarc=pass (p=none dis=none) d=gmail.com
  • Ironport-phdr: 9a23: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
Hello CellML people and Alan,

My research lab has tried to use CellML files to simulate some biological
phenomenon.

The general way that what we have already done to simulate the CellML is:
- Download CellML files from PMR websites
- Open the CellML file into OpenCOR
- Set the XY axis at the Simulation tab
- Simulate it.

Right now, some of the models, especially in Electrophysiology category,
are working well and resulted as we expected. However some of the models,
most of them are in Cardiovascular Circulation model, are not working as we
expected. What we know the ones that are not working as we expected are:

https://models.physiomeproject.org/exposure/feccb0f0649425a61526049f35c3b7fb/MainSystemic.cellml/view
https://models.physiomeproject.org/exposure/ff8be5f140e68612284488cf9879eb5f/lpc.cellml/view

What we know that since the CellML files are more than one file and
dependent each other, we don't know how to use the multiple CellML files
that are dependent each other to simulate them on the OpenCOR.

Maybe you can give us the input or the way to simulate multiple dependent
CellML files, since this is new thing for us.

That is for now. Sorry for a long message. I hope you know what I'm trying
to tell in here. Thank you


Aroli Marcellinus

*Kumoh Institute of Technology**Computational Medicine Laboratory*
61 Daehak-ro (Sinpyeong-dong), Gumi, Gyeongbuk
+82 10 9724 3957
KTalk ID: vondarkness

Archive powered by MHonArc 2.6.18.

Top of page