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Hi Aroli,



FWIW, I have just opened the two links you provided and clicked on their
corresponding “Launch with OpenCOR” link (to the right of the page under the
“Views Available” header):
https://models.physiomeproject.org/exposure/feccb0f0649425a61526049f35c3b7fb/MainSystemic.cellml/view:
As expected, this opens a file named “MainSystemic.cellml” using the CellML
Text view.
If you then switch to the Simulation Experiment view (and set the “Point
interval” to, say, 0.001 second), you will be able to run the model. Having
said that, the only model parameter that you will be able to plot is the
variable of integration (!).
Note that this CellML file imports other CellML files, so to download this
CellML file only will clearly not work. You also need the other files it
imports.
https://models.physiomeproject.org/exposure/ff8be5f140e68612284488cf9879eb5f/lpc.cellml/view:
Still as expected, this opens a file named “lpc.cellml” using the CellML Text
view.
Again, if you switch to the Simulation Experiment view (and the “Ending
point” and “Point interval” to, say, 10 s and 0.001 s, respectively), you
will be able to run the model, as well as plot any of its parameters.


So, I don’t know whether the models themselves are correct, but they can
certainly be run.



HTH, Alan.



On 02/08/2017, 03:34, "Aroli Marcellinus"
<aroli.marcellinus AT gmail.com>
wrote:



Hello CellML people and Alan,

My research lab has tried to use CellML files to simulate some biological
phenomenon.

The general way that what we have already done to simulate the CellML is:

- Download CellML files from PMR websites

- Open the CellML file into OpenCOR

- Set the XY axis at the Simulation tab

- Simulate it.

Right now, some of the models, especially in Electrophysiology category, are
working well and resulted as we expected. However some of the models, most of
them are in Cardiovascular Circulation model, are not working as we expected.
What we know the ones that are not working as we expected are:

https://models.physiomeproject.org/exposure/feccb0f0649425a61526049f35c3b7fb/MainSystemic.cellml/view
https://models.physiomeproject.org/exposure/ff8be5f140e68612284488cf9879eb5f/lpc.cellml/view

What we know that since the CellML files are more than one file and dependent
each other, we don't know how to use the multiple CellML files that are
dependent each other to simulate them on the OpenCOR.

Maybe you can give us the input or the way to simulate multiple dependent
CellML files, since this is new thing for us.

That is for now. Sorry for a long message. I hope you know what I'm trying to
tell in here. Thank you



Aroli Marcellinus
Kumoh Institute of Technology
Computational Medicine Laboratory
61 Daehak-ro (Sinpyeong-dong), Gumi, Gyeongbuk
+82 10 9724 3957
KTalk ID: vondarkness

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• [cellml-discussion] Some of the CellML not working in OpenCOR, Aroli Marcellinus, 08/02/2017
  • Re: [cellml-discussion] Some of the CellML not working in OpenCOR, Alan Garny, 08/03/2017
    • Re: [cellml-discussion] Some of the CellML not working in OpenCOR, Aroli Marcellinus, 08/03/2017
      • Re: [cellml-discussion] Some of the CellML not working in OpenCOR, Alan Garny, 08/03/2017
        • Re: [cellml-discussion] Some of the CellML not working in OpenCOR, Aroli Marcellinus, 08/08/2017
          • Re: [cellml-discussion] Some of the CellML not working in OpenCOR, Alan Garny, 08/09/2017

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