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Hi Andrew,

Thanks for the reply. In the interim, I've pulled the latest version from
mercurial and ignored "make install", and just told my app to pull the libs
from the build directory. However, it would be nice to get things working,
and even nicer just to have the 64-bit pre-built sdk :)

My configure line is: ./configure --enable-context=no --enable-annotools
--enable-cuses --enable-cevas --enable-malaes --enable-ccgs --enable-cis
--enable-vacss --enable-rdf --enable-celeds --enable-java
CPPFLAGS="-I/usr/lib/jvm/java-6-sun/include
-I/usr/lib/jvm/java-6-sun/include/linux"

I wish that I had provided you with the error that caused the below - at the
moment I've nuked the version of the build that was failing in order to get
the latest version from mercurial and not have too many versions in one
place to confuse me :) When I've got a minute I'll try to recreate the error
- should be able to get back to you today.

thanks,
Allyson


On 20 June 2011 23:07, Andrew Miller <ak.miller at auckland.ac.nz> wrote:

> On 20/06/11 21:05, Allyson Lister wrote:
>
>> Hi Andrew,
>>
>> Thanks for the idea. I did try to ignore the warning, and go ahead with
>> "sudo make install", but it seems that it does cause problems with the
>> build. Here's the error, and you see that the same classes that are
>> complained about in the "make check" are mentioned in the ld step below:
>>
>> /usr/bin/ld: cannot find -lannotools
>> /usr/bin/ld: cannot find -lcevas
>> /usr/bin/ld: cannot find -lcuses
>> /usr/bin/ld: cannot find -lmalaes
>> /usr/bin/ld: cannot find -lvacss
>> /usr/bin/ld: cannot find -lccgs
>> /usr/bin/ld: cannot find -lceleds
>> /usr/bin/ld: cannot find -lceledsexporter
>> /usr/bin/ld: cannot find -lcis
>> collect2: ld returned 1 exit status
>> libtool: install: error: relink `libcellml_java_bridge.la
>> <http://libcellml_java_bridge.**la <http://libcellml_java_bridge.la>>'
>> with the above command before
>> installing it
>>
>
> Hi Allyson,
>
> I'm wondering if that could be a different issue - perhaps a combination of
> configure flags that has never been tested isn't working correctly
> (generally we either turn everything on, or only turn on the things we are
> working with - we can't try every possible combination, because of the
> combinatorial explosion of possibilities, but we could do better at testing
> a greater number of different combinations).
>
> Did you turn annotools, cevas, cuses and the other libraries on when you
> invoked configure (it is supposed to be possible to turn Java on without
> them, but this isn't tested as part of our automated builds)?
>
> Could you also paste in the exact compilation line that generates the
> error?
>
> Best wishes,
> Andrew
>
> make[2]: *** [install-libLTLIBRARIES] Error 1
>> make[2]: Leaving directory `/home/nall2/**ExternalApplications/cellml-**
>> api'
>> make[1]: *** [install-am] Error 2
>> make[1]: Leaving directory `/home/nall2/**ExternalApplications/cellml-**
>> api'
>> make: *** [install] Error 2
>>
>>
>> Should I just try to get the latest from mercurial instead of the 1.9
>> sources?
>>
>> Thanks,
>> Allyson
>>
>> On 16 June 2011 21:52, Andrew Miller <ak.miller at auckland.ac.nz
>> <mailto:ak.miller at auckland.ac.**nz <ak.miller at auckland.ac.nz>>>
>> wrote:
>>
>> On 17/06/11 02:24, Allyson Lister wrote:
>>
>> By the way, I've just tried to compile the api on the 64-bit
>> machine
>> from scratch. I get a successful compile, and then when I run "make
>> check" it runs OK until the tests, when it says:
>>
>> make tests/RunTestBin
>> make[2]: Entering directory
>> `/home/nall2/__**ExternalApplications/cellml-__**api'
>> Makefile:7962: target
>> `javacp/cellml_bootstrap/__**AnnoToolsBootstrap.class'
>> given more than once in the same rule.
>> Makefile:7962: target
>> `javacp/cellml_bootstrap/__**CeVASBootstrap.class'
>> given more than once in the same rule.
>> Makefile:7962: target
>> `javacp/cellml_bootstrap/__**CUSESBootstrap.class'
>> given more than once in the same rule.
>> Makefile:7962: target
>> `javacp/cellml_bootstrap/__**MaLaESBootstrap.class'
>> given more than once in the same rule.
>> Makefile:7962: target
>> `javacp/cellml_bootstrap/__**VACSSBootstrap.class'
>> given more than once in the same rule.
>> Makefile:7962: target
>> `javacp/cellml_bootstrap/__**CCGSBootstrap.class'
>> given more than once in the same rule.
>> Makefile:7962: target
>> `javacp/cellml_bootstrap/__**CeLEDSBootstrap.class'
>> given more than once in the same rule.
>> Makefile:7962: target
>> `javacp/cellml_bootstrap/__**CeLEDSExporterBootstrap.class' given
>> more than
>> once in the same rule.
>> Makefile:7962: target
>> `javacp/cellml_bootstrap/__**CISBootstrap.class' given
>> more than once in the same rule.
>>
>>
>> Hi all,
>>
>> You can ignore this particular warning; the underlying cause was
>> fixed after 1.9 was released (so you won't see it with latest
>> Mercurial) but the warning isn't a fatal error in the build system.
>>
>> Best wishes,
>> Andrew
>>
>>
>>
>> I've downloaded the sources from
>> http://www.cellml.org/tools/__**downloads/cellml_api/releases/**
>> __1.9 <http://www.cellml.org/tools/__downloads/cellml_api/releases/__1.9><
>> http://www.cellml.org/tools/**downloads/cellml_api/releases/**1.9<http://www.cellml.org/tools/downloads/cellml_api/releases/1.9>
>> >
>>
>>
>> Have I done something wrong?
>>
>> thanks :) Allyson
>>
>> On 16 June 2011 14:03, Allyson Lister
>> <a.l.lister at newcastle.ac.uk <mailto:a.l.lister at
>> newcastle.**ac.uk<a.l.lister at newcastle.ac.uk>
>> >
>> <mailto:a.l.lister at newcastle._**_ac.uk
>> <mailto:a.l.lister at newcastle.**ac.uk <a.l.lister at
>> newcastle.ac.uk>>>>
>> wrote:
>>
>> Hi Alan,
>>
>> Thanks for the info - it's good to know that it's on its way.
>>
>> Thanks again,
>> Allyson
>>
>> On 16 June 2011 13:46, Alan Garny <alan.garny at dpag.ox.ac.uk
>> <mailto:alan.garny at dpag.ox.ac.**uk <alan.garny at dpag.ox.ac.uk>>
>> <mailto:alan.garny at dpag.ox.ac.**__uk
>> <mailto:alan.garny at dpag.ox.ac.**uk <alan.garny at
>> dpag.ox.ac.uk>>>>
>> wrote:
>>
>> Hi Allyson,____
>>
>> __ __
>>
>> My understanding is that it?s something the CellML team is
>> working on. So, it should only be a matter of time before
>> it
>> becomes available (I am also waiting for it).____
>>
>> __ __
>>
>> Alan____
>>
>> __ __
>>
>> *From:* cellml-tools-developers-__**bounces at
>> cellml.org<cellml-tools-developers-__bounces at cellml.org>
>> <mailto:cellml-tools-**developers-bounces at
>> cellml.org<cellml-tools-developers-bounces at cellml.org>
>> >
>> <mailto:cellml-tools-__**developers-bounces at
>> cellml.org<cellml-tools-__developers-bounces at cellml.org>
>> <mailto:cellml-tools-**developers-bounces at
>> cellml.org<cellml-tools-developers-bounces at cellml.org>
>> >**>
>> [mailto:cellml-tools-__**developers-bounces at
>> cellml.org<cellml-tools-__developers-bounces at cellml.org>
>>
>> <mailto:cellml-tools-**developers-bounces at
>> cellml.org<cellml-tools-developers-bounces at cellml.org>
>> >
>> <mailto:cellml-tools-__**developers-bounces at
>> cellml.org<cellml-tools-__developers-bounces at cellml.org>
>> <mailto:cellml-tools-**developers-bounces at
>> cellml.org<cellml-tools-developers-bounces at cellml.org>
>> >**>__] *On Behalf
>> Of *Allyson Lister
>> *Sent:* 16 June 2011 13:41
>> *To:* A list for the developers of CellML tools
>> *Subject:* [cellml-dev] 64-bit version of the ubuntu
>> sdk?____
>>
>> __ __
>>
>> Hi all,
>>
>> I'm quite successfully using the CellML API SDK for
>> ubuntu that
>> you guys are providing - thanks very much for that, as
>> it saves
>> a lot of time and effort on install. However, I'm about
>> to run
>> my code on an ubuntu natty 64-bit server, and was
>> wondering if
>> you could build a 64-bit version of the sdk, or if I
>> should try
>> to install the api from source for this OS.
>>
>> Thanks very much,
>> Allyson
>>
>> --
>> Allyson Lister
>>
>> Please note the new email address of
>> allyson.lister at newcastle.ac.uk
>> <mailto:allyson.lister@**newcastle.ac.uk<allyson.lister at
>> newcastle.ac.uk>
>> >
>> <mailto:allyson.lister at
>> __newca**stle.ac.uk<http://newcastle.ac.uk>
>> <mailto:allyson.lister@**newcastle.ac.uk<allyson.lister at
>> newcastle.ac.uk>>>,
>> although the old email
>> address will still work.
>>
>> Newcastle University, http://www.ncl.ac.uk
>> <http://www.ncl.ac.uk/>
>>
>> http://themindwobbles.__wordpr**ess.com <http://wordpress.com>
>>
>> <http://themindwobbles.**wordpress.com<http://themindwobbles.wordpress.com>
>> >
>> <http://themindwobbles.__wordp**ress.com/ <http://wordpress.com/>
>>
>> <http://themindwobbles.**wordpress.com/<http://themindwobbles.wordpress.com/>
>> >>
>>
>> ____
>>
>>
>> ______________________________**___________________
>> cellml-tools-developers mailing list
>> cellml-tools-developers at __cell**ml.org <http://cellml.org>
>> <mailto:cellml-tools-**developers at
>> cellml.org<cellml-tools-developers at cellml.org>
>> >
>> <mailto:cellml-tools-__**developers at
>> cellml.org<cellml-tools-__developers at cellml.org>
>> <mailto:cellml-tools-**developers at
>> cellml.org<cellml-tools-developers at cellml.org>
>> >>
>>
>> http://lists.cellml.org/__**mailman/listinfo/cellml-tools-**
>> __developers<http://lists.cellml.org/__mailman/listinfo/cellml-tools-__developers>
>> <http://lists.cellml.org/**mailman/listinfo/cellml-tools-**
>> developers<http://lists.cellml.org/mailman/listinfo/cellml-tools-developers>
>> >
>>
>>
>>
>>
>> --
>> Allyson Lister
>>
>> Please note the new email address of
>> allyson.lister at newcastle.ac.uk
>> <mailto:allyson.lister@**newcastle.ac.uk<allyson.lister at
>> newcastle.ac.uk>
>> >
>> <mailto:allyson.lister at
>> __newca**stle.ac.uk<http://newcastle.ac.uk>
>> <mailto:allyson.lister@**newcastle.ac.uk<allyson.lister at
>> newcastle.ac.uk>>>,
>> although the old email
>> address will still work.
>>
>> Newcastle University, http://www.ncl.ac.uk
>> <http://www.ncl.ac.uk/>
>> http://themindwobbles.__wordpr**ess.com <http://wordpress.com>
>>
>> <http://themindwobbles.**wordpress.com<http://themindwobbles.wordpress.com>
>> >
>>
>> <http://themindwobbles.__wordp**ress.com/ <http://wordpress.com/>
>>
>> <http://themindwobbles.**wordpress.com/<http://themindwobbles.wordpress.com/>
>> >>
>>
>>
>>
>>
>>
>> --
>> Allyson Lister
>>
>> Please note the new email address of
>> allyson.lister at newcastle.ac.uk
>> <mailto:allyson.lister@**newcastle.ac.uk<allyson.lister at
>> newcastle.ac.uk>
>> >
>> <mailto:allyson.lister at
>> __newca**stle.ac.uk<http://newcastle.ac.uk>
>> <mailto:allyson.lister@**newcastle.ac.uk<allyson.lister at
>> newcastle.ac.uk>>>,
>> although the old email
>> address
>> will still work.
>>
>> Newcastle University, http://www.ncl.ac.uk <http://www.ncl.ac.uk/>
>> http://themindwobbles.__wordpr**ess.com <http://wordpress.com>
>>
>> <http://themindwobbles.**wordpress.com<http://themindwobbles.wordpress.com>
>> >
>> <http://themindwobbles.__wordp**ress.com/ <http://wordpress.com/>
>>
>> <http://themindwobbles.**wordpress.com/<http://themindwobbles.wordpress.com/>
>> >>
>>
>>
>>
>>
>>
>> ______________________________**___________________
>> cellml-tools-developers mailing list
>> cellml-tools-developers at __cell**ml.org <http://cellml.org>
>> <mailto:cellml-tools-**developers at
>> cellml.org<cellml-tools-developers at cellml.org>
>> >
>> http://lists.cellml.org/__**mailman/listinfo/cellml-tools-**
>> __developers<http://lists.cellml.org/__mailman/listinfo/cellml-tools-__developers>
>> <http://lists.cellml.org/**mailman/listinfo/cellml-tools-**
>> developers<http://lists.cellml.org/mailman/listinfo/cellml-tools-developers>
>> >
>>
>>
>> ______________________________**___________________
>> cellml-tools-developers mailing list
>> cellml-tools-developers at __cell**ml.org <http://cellml.org>
>> <mailto:cellml-tools-**developers at cellml.org<cellml-tools-developers
>> at cellml.org>
>> >
>> http://lists.cellml.org/__**mailman/listinfo/cellml-tools-**
>> __developers<http://lists.cellml.org/__mailman/listinfo/cellml-tools-__developers>
>>
>> <http://lists.cellml.org/**mailman/listinfo/cellml-tools-**developers<http://lists.cellml.org/mailman/listinfo/cellml-tools-developers>
>> >
>>
>>
>>
>>
>> --
>> Allyson Lister
>>
>> Please note the new email address of allyson.lister at newcastle.ac.uk
>> <mailto:allyson.lister@**newcastle.ac.uk <allyson.lister at
>> newcastle.ac.uk>>,
>> although the old email address
>> will still work.
>>
>> Newcastle University, http://www.ncl.ac.uk <http://www.ncl.ac.uk/>
>> http://themindwobbles.**wordpress.com<http://themindwobbles.wordpress.com><
>> http://themindwobbles.**wordpress.com/<http://themindwobbles.wordpress.com/>
>> >
>>
>>
>>
>>
>> ______________________________**_________________
>> cellml-tools-developers mailing list
>> cellml-tools-developers@**cellml.org <cellml-tools-developers at
>> cellml.org>
>> http://lists.cellml.org/**mailman/listinfo/cellml-tools-**developers<http://lists.cellml.org/mailman/listinfo/cellml-tools-developers>
>>
>
> ______________________________**_________________
> cellml-tools-developers mailing list
> cellml-tools-developers@**cellml.org <cellml-tools-developers at cellml.org>
> http://lists.cellml.org/**mailman/listinfo/cellml-tools-**developers<http://lists.cellml.org/mailman/listinfo/cellml-tools-developers>
>



--
Allyson Lister

Please note the new email address of allyson.lister at newcastle.ac.uk,
although the old email address will still work.

Newcastle University, http://www.ncl.ac.uk
http://themindwobbles.wordpress.com
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• [cellml-dev] 64-bit version of the ubuntu sdk?, Allyson Lister, 06/17/2011
  • [cellml-dev] 64-bit version of the ubuntu sdk?, Alan Garny, 06/17/2011
    • [cellml-dev] 64-bit version of the ubuntu sdk?, Allyson Lister, 06/17/2011
      • [cellml-dev] 64-bit version of the ubuntu sdk?, Allyson Lister, 06/17/2011
        • [cellml-dev] 64-bit version of the ubuntu sdk?, Andrew Miller, 06/17/2011
          • [cellml-dev] 64-bit version of the ubuntu sdk?, Allyson Lister, 06/20/2011
            • [cellml-dev] 64-bit version of the ubuntu sdk?, Andrew Miller, 06/21/2011
              • [cellml-dev] 64-bit version of the ubuntu sdk?, Allyson Lister, 06/21/2011

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