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Thanks for the info.
I got the library build from the git repositoy with the subset of packages
enabled in your description.

Unfortunately, I also need

TELICEMS_LIB

for antimony.

So I installed the additional dependencies

- bison

- flex

and set

-DENABLE_TELICEMS


But than the build fails with

Scanning dependencies of target telicems
[ 78%] Building CXX object
CMakeFiles/telicems.dir/TeLICeMS/sources/TeLICeMSImpl.cpp.o
In file included from
/home/mkoenig/git/cellml-api/TeLICeMS/sources/TeLICeMSImpl.hxx:5:0,
from
/home/mkoenig/git/cellml-api/TeLICeMS/sources/TeLICeMSImpl.cpp:2:
/home/mkoenig/git/cellml-api/TeLICeMS/sources/TeLICeMService.hpp:9:29:
fatal error: IfaceTeLICeMS.hxx: No such file or directory
compilation terminated.
CMakeFiles/telicems.dir/build.make:78: recipe for target
'CMakeFiles/telicems.dir/TeLICeMS/sources/TeLICeMSImpl.cpp.o' failed
make[2]: *** [CMakeFiles/telicems.dir/TeLICeMS/sources/TeLICeMSImpl.cpp.o]
Error 1
CMakeFiles/Makefile2:441: recipe for target 'CMakeFiles/telicems.dir/all'
failed
make[1]: *** [CMakeFiles/telicems.dir/all] Error 2

What do I have to do to build with TELICEMS ?
M


On Wed, Oct 19, 2016 at 10:25 AM, Alan Garny
<alan.garny AT inria.fr>
wrote:

> Hi Matthias/Lucian,
>
>
>
> FWIW, I am using the CellML API on both Ubuntu 14.04 LTS and Ubuntu 16.04
> LTS, and it’s all working fine. The binaries you mention are somewhat old
> and a few things have since been fixed in the API (see here
> <https://github.com/cellmlapi/cellml-api/commits/master>). This is the
> reason I am building the CellML API myself. Note, however, that I am not
> building all of the CellML API, just the bits that are needed by OpenCOR
> <http://opencor.ws/>. Anyway, and just in case it may help you (and maybe
> others), here
> <https://github.com/opencor/opencor/tree/master/src/plugins/api/CellMLAPI>
> is some information on how I build the CellML API on Windows, Linux and
> macOS.
>
>
>
> HTH, Alan.
>
>
>
> On 19/10/2016, 10:05, "Matthias König" <cellml-tools-developers-
> request AT lists.cellml.org
> on behalf of
> konigmatt AT googlemail.com>
> wrote:
>
>
>
> More information for the issue below.
>
> Messages were rejected before
>
>
>
> ---------- Forwarded message ----------
> From: *SYMPA*
> <sympa AT lists.cellml.org>
> Date: Wed, Oct 19, 2016 at 9:51 AM
> Subject: cellml-tools-developers Message distribution failed:
> Authorization denied
> To:
> konigmatt AT googlemail.com
>
>
> Your message for list 'cellml-tools-developers' (attached below) was
> rejected.
> You are not allowed to send this message for the following reason:
>
> Message distribution in the list is restricted to list subscribers.
> If you are subscribed to the list with a different email address, you
> should
> either use that other email address or update your list membership with the
> new email address.
>
>
> For further information, please contact cellml-tools-developers-
> owner AT lists.cellml.org
> or
> servicedesk AT auckland.ac.nz
>
>
> ---------- Forwarded message ----------
> From: "Matthias König"
> <konigmatt AT googlemail.com>
> To: Lucian Smith
> <lucianoelsmitho AT gmail.com>
> Cc: A list for the developers of CellML tools <cellml-tools-developers@
> cellml.org>
> Date: Wed, 19 Oct 2016 09:50:56 +0200
> Subject: Re: The CellML API on Ubuntu 16.04
>
> I already tried to build the SDK from source but never could manage to
> make this work (dependency nightmare). I have no idea what are the third
> party dependencies are and there are so many of them.
>
>
>
> For instance trying to just build the barbone SDK via
>
> *cmake *-DCMAKE_RUNTIME_OUTPUT_DIRECTORY=*$*{CELLML_BUILD}
> ../*$*{API_VERSION}
>
> make all
>
> results in:
>
>
> Scanning dependencies of target cellml
> [ 1%] Building CXX object CMakeFiles/cellml.dir/sources/Utilities.cpp.o
> In file included from /home/mkoenig/tmp/cellml-api-
> 1.13/sources/Utilities.cpp:1:0:
> /home/mkoenig/tmp/cellml-api-1.13/sources/Utilities.hxx:41:26: fatal
> error: Ifacexpcom.hxx: No such file or directory
> compilation terminated.
> CMakeFiles/cellml.dir/build.make:62: recipe for target
> 'CMakeFiles/cellml.dir/sources/Utilities.cpp.o' failed
> make[2]: *** [CMakeFiles/cellml.dir/sources/Utilities.cpp.o] Error 1
> CMakeFiles/Makefile2:1176: recipe for target 'CMakeFiles/cellml.dir/all'
> failed
>
> despite cmake-gui not showing any problems.
>
> Looking at the SDK-build/lib directory suggests that there are around 50
> library dependencies I somehow have to get installed for building.
>
> I already fought to build the cellml SDK 2 years ago and gave up than. And
> after 1h now I am at the same point.
>
>
>
> In summary: It would be nice to have a SDK build which works on Ubuntu
> 16.04 or at least a way that one can build the SDK easily.
>
>
>
>
>
> On Wed, Oct 19, 2016 at 8:35 AM, Matthias König
> <konigmatt AT googlemail.com>
> wrote:
>
> Just for information:
>
> I can reproduce this problem on all my Ubuntu 16.04 machines & in docker
> images based on Ubuntu 16.04
>
> I tried linking against 1.11, 1.12 and 1.13 from here
>
> wget
> https://sourceforge.net/projects/cellml-api/files/CellML-API-Nightly/1.12/20121031/linux-x86_64/${VERSION}.tar.bz2/download
> wget
> https://sourceforge.net/projects/cellml-api/files/CellML-API-Nightly/1.11/20120418/linux-x86_64/${VERSION}.tar.bz2/download
> *wget
> *https://sourceforge.net/projects/cellml-api/files/CellML-API-Nightly/1.13/20130716/linux-x86_64/*$*{VERSION}.tar.bz2/download
>
> but none of the SDK versions works on Ubuntu 16.04.
>
> I have no problems in 14.04, but it is no longer supported . The current
> Long term support version is 16.04 LTS and cellml SDK should work on it.
>
> Matthias
>
>
>
>
>
> On Tue, Oct 18, 2016 at 11:12 PM, Lucian Smith
> <lucianoelsmitho AT gmail.com>
> wrote:
>
> So, it turns out that in Antimony, using the now-old CellML API, calls to
> the CellML library error out with a SIGABRT if compiled on Ubuntu 16.04,
> but not when compiled on Ubuntu 14.04. This is presumably an issue with
> the CellML SDK.
>
>
>
> While a new CellML library would certainly be nice, I'm unlikely to have
> the time to update Antimony to use it any time soon, so if someone wouldn't
> mind looking into creating a CellML SDK for these more recent versions of
> Ubuntu, that'd be great.
>
>
>
> SDKs for more recent versions of Visual Studio would also be nice, though
> I haven't actually checked to see if they already exist ;-)
>
>
>
> Thank you!
>
>
>
> -Lucian
>
>
>
> --
>
> Matthias König
> Junior Group Leader LiSym - Systems Medicine of the Liver
> Humboldt-University Berlin, Institute for Theoretical Biology
> https://www.livermetabolism.com
> konigmatt AT googlemail.com
> Tel: +49 30 20938450
> Tel: +49 176 81168480
>
>
>
>
> --
>
> Matthias König
> Junior Group Leader LiSym - Systems Medicine of the Liver
> Humboldt-University Berlin, Institute for Theoretical Biology
> https://www.livermetabolism.com
> konigmatt AT googlemail.com
> Tel: +49 30 20938450
> Tel: +49 176 81168480
>
>
>
>
>
>
> --
>
> Matthias König
> Junior Group Leader LiSym - Systems Medicine of the Liver
> Humboldt-University Berlin, Institute for Theoretical Biology
> https://www.livermetabolism.com
> konigmatt AT googlemail.com
> Tel: +49 30 20938450
> Tel: +49 176 81168480
>



--
Matthias König
Junior Group Leader LiSym - Systems Medicine of the Liver
Humboldt-University Berlin, Institute for Theoretical Biology
https://www.livermetabolism.com
konigmatt AT googlemail.com
Tel: +49 30 20938450
Tel: +49 176 81168480

---

• [[cellml-dev] ] Fwd: cellml-tools-developers Message distribution failed: Authorization denied, Matthias König, 10/19/2016
  • Re: [[cellml-dev] ] Fwd: cellml-tools-developers Message distribution failed: Authorization denied, Alan Garny, 10/19/2016
    • Re: [[cellml-dev] ] Fwd: cellml-tools-developers Message distribution failed: Authorization denied, Matthias König, 10/20/2016
      • Re: [[cellml-dev] ] Fwd: cellml-tools-developers Message distribution failed: Authorization denied, Alan Garny, 10/20/2016
        • Re: [[cellml-dev] ] Fwd: cellml-tools-developers Message distribution failed: Authorization denied, Matthias König, 10/20/2016
          • Re: [[cellml-dev] ] Fwd: cellml-tools-developers Message distribution failed: Authorization denied, Alan Garny, 10/21/2016
            • Re: [[cellml-dev] ] Fwd: cellml-tools-developers Message distribution failed: Authorization denied, Matthias König, 10/21/2016

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