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[cellml-discussion] PMR categories


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  • From: david.nickerson at nus.edu.sg (David Nickerson)
  • Subject: [cellml-discussion] PMR categories
  • Date: Wed, 06 Jun 2007 09:06:13 +0800
Would I be correct in assuming that these terms will be key words added
to the model metadata and that the division into categories on the main
repository page will be assembled from queries on each of these
predefined key words? And if so, I'm gonna further assume that there are
no issues with having a model in more than one category, right?

And what are the consequences for a model not fitting into any of these
categories?

I'd suggest that multiscale is a bit too general to be useful in this
sort of setting, as its conceivable that pretty much every model in the
repository is multiscale in some sense.


David.

James Lawson wrote:
> Hi folks,
>
> Tommy is currently working on a sorting function for the main model list
> of the PMR. Peter is looking for some ideas on what categories people
> think should be included (with respect to biology, not curation - that
> will be separate, coming soon!) The old repository obviously has models
> listed under categories. Do we want to keep those categories? We don't
> want too many categories, so what is important? As well as just
> biological function, perhaps the model type is important too.
> Particularly when the repository goes 1.1 we'll start getting multiscale
> models.
>
> Here's a list I compiled, which represents most of the models we
> currently have.
>
> Multiscale
> Cardiobiology/Cardiophysiology
> Neurobiology/Neurophysiology
> Beta Cells/Insulin
> Electrophysiology
> Biomechanics
> Biochemistry
> Pharmacology
> Signal Transduction/Signalling
> Metabolism
> Energy Metabolism
> Cell Cycle
> Immunology
> Virology
> HIV
> Circadian Rhythms
> Calcium Dynamics
> Protein Structure & Function
>
> Please discuss.
>
> Kind regards,
> James Lawson
> _______________________________________________
> cellml-discussion mailing list
> cellml-discussion at cellml.org
> http://www.cellml.org/mailman/listinfo/cellml-discussion

--
David Nickerson, PhD
Research Fellow
Division of Bioengineering
Faculty of Engineering
National University of Singapore
Email: david.nickerson at nus.edu.sg


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