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[cellml-discussion] Java error on Mac OSX10.8.2


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  • From: r.britten at auckland.ac.nz (Randall Britten)
  • Subject: [cellml-discussion] Java error on Mac OSX10.8.2
  • Date: Tue, 26 Feb 2013 20:36:47 +0000
Hi Mark

I use Mac OS X 10.8.2. OpenCell v0.8 runs fine, as far as I can tell. As
Andre said, you need to install Xcode and the Xcode command line tools
(they are free from the Apple App store). (This is all just an interim
measure until the imminent release of OpenCOR. Development and
maintenance of OpenCell ceased after the v0.8 release in 2010, in favour
of the OpenCOR project. We will nevertheless try support you if you
decide to use it.)

Regards,
Randall



On 26/02/13 8:08 PM, "Mark Cannell" <mark.cannell at bristol.ac.uk> wrote:

>Hi All, Peter
>
>Could not seem to get OpenCell to run but OpenCor works and looks like a
>great tool. I look forward to version 1.0 and will see how 0.0 runs in
>the meantime,
>
>Thanks, Mark
>
>On 26/02/2013, at 3:35 AM, Peter Hunter <p.hunter at auckland.ac.nz> wrote:
>
>> Hi Mark,
>>
>> FYI, there is a new CellML simulation tool called OpenCOR being
>>developed by Alan Garny that is becoming our primary platform for
>>CellML-based modelling (see
>>http://www.cellml.org/getting-started/tutorials/opencordemo for download
>>instructions). This will shortly have CellML authoring capability and is
>>a more robust environment than OpenCell, although I currently use both -
>>OpenCell for authoring models and OpenCOR for running simulations.
>>OpenCOR has facilities for annotating models against bio-ontologies such
>>as GO, although access to the Ricordo webservices for providing the
>>ontologies is a wee way off (hopefully achieved by the time of the
>>CellML workshop in Auckland in a few weeks).
>>
>> Rgds, Peter
>>
>>
>> On 26/02/2013 4:37 a.m., Mark Cannell wrote:
>>> Hi All
>>>
>>> I've been trying to test the new open cell 0.8 on a mac but all I get
>>>is a java runtime error and I have no idea how to get over it:
>>>
>>> [Exception... "Component returned failure code: 0x80004005
>>>(NS_ERROR_FAILURE)
>>>[cellml_servicesICellMLIntegrationService.compileModelODE]" nsresult:
>>>"0x80004005 (NS_ERROR_FAILURE)" location: "JS frame ::
>>>chrome://opencell/content/util/Integration.js :: StartCollectingResults
>>>:: line 18" data: no]
>>>
>>> Has anyone run open cell on a mac? I used cor0.8 under a windows
>>>emulator and that worked Ok but trying to use an integrated
>>>platform/interface for student teaching is not working?
>>>
>>> Any ideas?
>>>
>>> Thanks
>>>
>>> Mark B. Cannell Ph.D. FRSNZ
>>> Professor of Cardiac Cell Biology
>>> School of Physiology& Pharmacology
>>> Medical Sciences Building
>>> University of Bristol
>>> Bristol
>>> BS8 1TD UK
>>>
>>> Mark.Cannell at bristol.ac.uk
>>>
>>>
>>>
>>>
>>> _______________________________________________
>>> cellml-discussion mailing list
>>> cellml-discussion at cellml.org
>>> http://lists.cellml.org/mailman/listinfo/cellml-discussion
>>
>> _______________________________________________
>> cellml-discussion mailing list
>> cellml-discussion at cellml.org
>> http://lists.cellml.org/mailman/listinfo/cellml-discussion
>
>Mark B. Cannell Ph.D. FRSNZ
>Professor of Cardiac Cell Biology
>School of Physiology& Pharmacology
>Medical Sciences Building
>University of Bristol
>Bristol
>BS8 1TD UK
>
>Mark.Cannell at bristol.ac.uk
>
>
>
>
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