First login?
Lost password?
 
 
cellml-discussion AT lists.cellml.org 
CellML Discussion List

Text archives Help


[cellml-discussion] Java error on Mac OSX10.8.2


Chronological Thread 
  • From: mark.cannell at bristol.ac.uk (Mark Cannell)
  • Subject: [cellml-discussion] Java error on Mac OSX10.8.2
  • Date: Tue, 26 Feb 2013 21:09:35 +0000
Hi Randall

I installed the tools and the repository code does runs in OpenCell. However
when I clone the distribution and edit anything I get the same java error I
got before the Xcode tools were installed. I have no idea what I could be
doing wrong..

Cheers Mark

On 26/02/2013, at 8:36 PM, Randall Britten <r.britten at auckland.ac.nz>
wrote:

> Hi Mark
>
> I use Mac OS X 10.8.2. OpenCell v0.8 runs fine, as far as I can tell. As
> Andre said, you need to install Xcode and the Xcode command line tools
> (they are free from the Apple App store). (This is all just an interim
> measure until the imminent release of OpenCOR. Development and
> maintenance of OpenCell ceased after the v0.8 release in 2010, in favour
> of the OpenCOR project. We will nevertheless try support you if you
> decide to use it.)
>
> Regards,
> Randall
>
>
>
> On 26/02/13 8:08 PM, "Mark Cannell" <mark.cannell at bristol.ac.uk> wrote:
>
>> Hi All, Peter
>>
>> Could not seem to get OpenCell to run but OpenCor works and looks like a
>> great tool. I look forward to version 1.0 and will see how 0.0 runs in
>> the meantime,
>>
>> Thanks, Mark
>>
>> On 26/02/2013, at 3:35 AM, Peter Hunter <p.hunter at auckland.ac.nz> wrote:
>>
>>> Hi Mark,
>>>
>>> FYI, there is a new CellML simulation tool called OpenCOR being
>>> developed by Alan Garny that is becoming our primary platform for
>>> CellML-based modelling (see
>>> http://www.cellml.org/getting-started/tutorials/opencordemo for download
>>> instructions). This will shortly have CellML authoring capability and is
>>> a more robust environment than OpenCell, although I currently use both -
>>> OpenCell for authoring models and OpenCOR for running simulations.
>>> OpenCOR has facilities for annotating models against bio-ontologies such
>>> as GO, although access to the Ricordo webservices for providing the
>>> ontologies is a wee way off (hopefully achieved by the time of the
>>> CellML workshop in Auckland in a few weeks).
>>>
>>> Rgds, Peter
>>>
>>>
>>> On 26/02/2013 4:37 a.m., Mark Cannell wrote:
>>>> Hi All
>>>>
>>>> I've been trying to test the new open cell 0.8 on a mac but all I get
>>>> is a java runtime error and I have no idea how to get over it:
>>>>
>>>> [Exception... "Component returned failure code: 0x80004005
>>>> (NS_ERROR_FAILURE)
>>>> [cellml_servicesICellMLIntegrationService.compileModelODE]" nsresult:
>>>> "0x80004005 (NS_ERROR_FAILURE)" location: "JS frame ::
>>>> chrome://opencell/content/util/Integration.js :: StartCollectingResults
>>>> :: line 18" data: no]
>>>>
>>>> Has anyone run open cell on a mac? I used cor0.8 under a windows
>>>> emulator and that worked Ok but trying to use an integrated
>>>> platform/interface for student teaching is not working?
>>>>
>>>> Any ideas?
>>>>
>>>> Thanks
>>>>
>>>> Mark B. Cannell Ph.D. FRSNZ
>>>> Professor of Cardiac Cell Biology
>>>> School of Physiology& Pharmacology
>>>> Medical Sciences Building
>>>> University of Bristol
>>>> Bristol
>>>> BS8 1TD UK
>>>>
>>>> Mark.Cannell at bristol.ac.uk
>>>>
>>>>
>>>>
>>>>
>>>> _______________________________________________
>>>> cellml-discussion mailing list
>>>> cellml-discussion at cellml.org
>>>> http://lists.cellml.org/mailman/listinfo/cellml-discussion
>>>
>>> _______________________________________________
>>> cellml-discussion mailing list
>>> cellml-discussion at cellml.org
>>> http://lists.cellml.org/mailman/listinfo/cellml-discussion
>>
>> Mark B. Cannell Ph.D. FRSNZ
>> Professor of Cardiac Cell Biology
>> School of Physiology& Pharmacology
>> Medical Sciences Building
>> University of Bristol
>> Bristol
>> BS8 1TD UK
>>
>> Mark.Cannell at bristol.ac.uk
>>
>>
>>
>>
>> _______________________________________________
>> cellml-discussion mailing list
>> cellml-discussion at cellml.org
>> http://lists.cellml.org/mailman/listinfo/cellml-discussion
>
> _______________________________________________
> cellml-discussion mailing list
> cellml-discussion at cellml.org
> http://lists.cellml.org/mailman/listinfo/cellml-discussion

Mark B. Cannell Ph.D. FRSNZ
Professor of Cardiac Cell Biology
School of Physiology& Pharmacology
Medical Sciences Building
University of Bristol
Bristol
BS8 1TD UK

Mark.Cannell at bristol.ac.uk






Archive powered by MHonArc 2.6.18.

Top of page