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[cellml-discussion] [Fwd: Visual model design and editing capabilities for CellML]


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  • From: j.lawson at auckland.ac.nz (James Lawson)
  • Subject: [cellml-discussion] [Fwd: Visual model design and editing capabilities for CellML]
  • Date: Thu, 30 Oct 2008 14:58:30 +1300
Likewise. Would be very interested to read this though.

Thanks,
James

Michael Cooling wrote:
> ooo
>
> something close to my heart
>
> but unfortunately Abhishek I can't seem to open your document...hope
> it's not my machine...?
>
> Regards,
>
> Mike Cooling, PhD
> Research Fellow
> Auckland Bioengineering Institute
> New Zealand
> http://www.bioeng.auckland.ac.nz/people/mcoo001
>
>
>
> Quoting Andrew Miller <ak.miller at auckland.ac.nz>:
>
>> Forwarding to cellml-discussion as this is the most appropriate
>> mailing list.
>>
>> -------- Original Message --------
>> Subject: Visual model design and editing capabilities for CellML
>> Date: Thu, 30 Oct 2008 14:03:14 +1300
>> From: Abhishek Tiwari <a.tiwari at auckland.ac.nz>
>> To: team at cellml.org, Andrew Miller <ak.miller at auckland.ac.nz>,
>> David
>> Nickerson <david.nickerson at gmail.com>
>>
>>
>>
>> Hi all,
>> Here I am attaching a proposal document "Visual model design and
>> editing capabilities for CellML", which I created long back and only
>> few of you have accessed the document. The document is more like a
>> conceptual sketch of how we can make CellML tools more user friendly
>> and versatile. I don't claim that this will be very useful for CellML
>> team especially when document is incomplete, but it can convey the
>> concepts and requirements. In recent there have been a lot of
>> discussion about metadata specification roadmap and I thought this
>> would be appropriate time to get feedback from CellML team and other
>> users, as concept describe in document may need some extended versions
>> of these specifications. To develop a visual model design and editing
>> capabilities for CellML, we need
>> 1) Defined set of symbols for network diagrams, like SBGN or Edinburgh
>> Pathway Notation but more optimized for CellML. (Do we need CellML
>> sepcific visual notations or we should fallow existing standards ? )
>> 2) Model visual representation metadata specification (updated
>> http://www.cellml.org/Members/jlaw060/cellml-metadata-roadmap/), it
>> will be closely related with visual notation system we select for
>> CellML tools
>> The terms, definition and other requirements mentioned in proposal are
>> not standard at all, and open for comments and feedbacks.
>>
>> thanks for valuable time and comments/suggestions.
>> Abhishek
>
>
>
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