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Forwarding to cellml-discussion as this is the most appropriate mailing
list.

-------- Original Message --------
Subject: Visual model design and editing capabilities for CellML
Date: Thu, 30 Oct 2008 14:03:14 +1300
From: Abhishek Tiwari <a.tiwari at auckland.ac.nz>
To: team at cellml.org, Andrew Miller <ak.miller at auckland.ac.nz>,
David
Nickerson <david.nickerson at gmail.com>



Hi all,
Here I am attaching a proposal document "Visual model design and editing
capabilities for CellML", which I created long back and only few of you
have accessed the document. The document is more like a conceptual
sketch of how we can make CellML tools more user friendly and
versatile. I don't claim that this will be very useful for CellML team
especially when document is incomplete, but it can convey the concepts
and requirements. In recent there have been a lot of discussion about
metadata specification roadmap and I thought this would be appropriate
time to get feedback from CellML team and other users, as concept
describe in document may need some extended versions of these
specifications. To develop a visual model design and editing
capabilities for CellML, we need
1) Defined set of symbols for network diagrams, like SBGN or Edinburgh
Pathway Notation but more optimized for CellML. (Do we need CellML
sepcific visual notations or we should fallow existing standards ? )
2) Model visual representation metadata specification (updated
http://www.cellml.org/Members/jlaw060/cellml-metadata-roadmap/), it will
be closely related with visual notation system we select for CellML tools
The terms, definition and other requirements mentioned in proposal are
not standard at all, and open for comments and feedbacks.

thanks for valuable time and comments/suggestions.
Abhishek


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• [cellml-discussion] [Fwd: Visual model design and editing capabilities for CellML], Andrew Miller, 10/30/2008
  • [cellml-discussion] [Fwd: Visual model design and editing capabilities for CellML], Michael Cooling, 10/30/2008
    • [cellml-discussion] [Fwd: Visual model design and editing capabilities for CellML], James Lawson, 10/30/2008
  • [cellml-discussion] [Fwd: Visual model design and editing capabilities for CellML], Sarala Dissanayake, 10/30/2008
  • [cellml-discussion] [Fwd: Visual model design and editing capabilities for CellML], James Lawson, 10/30/2008
    • [cellml-discussion] [Fwd: Visual model design and editing capabilities for CellML], Michael Hucka, 10/30/2008
      • [cellml-discussion] [Fwd: Visual model design and editing capabilities for CellML], Nicolas Le Novere, 10/30/2008
      • [cellml-discussion] [Fwd: Visual model design and editing capabilities for CellML], Nicolas Le Novere, 10/30/2008

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