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[cellml-dev] cellml_services in java version of the CellML DOM API


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  • From: a.l.lister at newcastle.ac.uk (Allyson Lister)
  • Subject: [cellml-dev] cellml_services in java version of the CellML DOM API
  • Date: Mon, 17 May 2010 13:37:28 +0100
Also, I just wanted to add - it looks like the cellml.jar now includes both
cellml_bootstrap and cellml_services, so hopefully the problem with the ld
command below will be the last one!

:) Thanks, Allyson

On 17 May 2010 13:36, Allyson Lister <a.l.lister at newcastle.ac.uk> wrote:

> Hi Andrew, Andre,
>
> Well, I tried just adding the --enable-annotools as suggested by Andrew,
> and I had a successful build all the way through the steps up to (and
> including) the "make" command. When I then tried "sudo make install", I got
> partway through that, and then was presented with the following error:
>
> /usr/bin/ld: cannot find -lannotools
> collect2: ld returned 1 exit status
> libtool: install: error: relink `libcellml_java_bridge.la' with the above
> command before installing it
> make[2]: *** [install-libLTLIBRARIES] Error 1
>
> I'm not sure what to do with this error. Does anyone have any ideas?
>
> Thanks very much for all your help so far,
>
> Allyson
>
>
> On 17 May 2010 12:26, Andrew Miller <ak.miller at auckland.ac.nz> wrote:
>
>> On 17/05/10 23:19, David Nickerson wrote:
>>
>>> Hi Allyson,
>>>
>>> I built the CellML dom api with the --enable-java and --enable-rdf
>>>> commands
>>>> only in the configure call.
>>>>
>>>
>>> While I have never tried to use the Java bindings, I have often found
>>> that you need to turn on most of the "optional" features to get a
>>> usable build of the CellML API.
>>>
>>
>> The original message mentioned an error trying to use AnnoTools, which is
>> an optional module that needs to be explicitly turned on with
>> --enable-annotools (anything in cellml_services needs to be turned on with
>> the relevant option).
>>
>> However, cellml_bootstrap should only need --enable-java, so I'm not sure
>> why you were running into errors there - that is something I would need to
>> look into (probably on Wednesday) - and something which has worked for me
>> in
>> the past, so has either been broken recently, or is broken with your system
>> or CellML API configuration.
>>
>> Best wishes,
>> Andrew
>>
>>
>> I can't recall the default
>>> configuration, but if you try adding '--enable-examples
>>> --enable-annotools --enable-cuses --enable-cevas --enable-malaes
>>> --enable-ccgs --enable-celeds' to your configure command that might
>>> help. At least that is the minimum set I find required to get code
>>> generation working. If that doesn't do much, you may need to add
>>> '--enable-context --enable-vacss --enable-corba --enable-server
>>> --enable-cis' to turn on pretty much everything....
>>>
>>> Good luck!
>>> Andre.
>>> _______________________________________________
>>> cellml-tools-developers mailing list
>>> cellml-tools-developers at cellml.org
>>> http://www.cellml.org/mailman/listinfo/cellml-tools-developers
>>>
>>
>> _______________________________________________
>> cellml-tools-developers mailing list
>> cellml-tools-developers at cellml.org
>> http://www.cellml.org/mailman/listinfo/cellml-tools-developers
>>
>
>
>
> --
> Allyson Lister
> http://themindwobbles.wordpress.com
>
> CISBAN, http://www.cisban.ac.uk
> Newcastle University
>



--
Allyson Lister
http://themindwobbles.wordpress.com

CISBAN, http://www.cisban.ac.uk
Newcastle University
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