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[cellml-dev] cellml_services in java version of the CellML DOM API


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  • From: a.l.lister at newcastle.ac.uk (Allyson Lister)
  • Subject: [cellml-dev] cellml_services in java version of the CellML DOM API
  • Date: Mon, 17 May 2010 13:59:32 +0100
Hi,

I did run a make clean first, and then ran make, which ran with 0 errors
hidden in the output. I did not use a brand-new directory, but the one I
used before. However, I've just tried with a new directory using the
following commands:

hg clone http://cellml-api.hg.sourceforge.net:8000/hgroot/cellml-api
cd cellml-api
aclocal && autoconf && automake
./configure --enable-java --enable-rdf --enable-annotools
make
sudo make install

...and I get the same "ld" error as described before.

As a second problem, while I was waiting for an answer to the "ld" error, I
thought I'd try to compile my java code with the updated cellml.jar file. I
got a different error this time:

CellMLReader.java:[36,40] cannot find symbol
symbol : class CellMLBootstrap
location: package cellml_bootstrap

Indeed, when I look in the cellml.jar file, while there is a
cellml_bootstrap directory, the only thing in it is
AnnoToolsBootstrap.class, and no CellML Bootstrap class. Which extra option
do I need to get this class? I'm finding the configure options really
difficult to understand: is there a list somewhere of which classes will be
created according to which configure options? I'd rather not build anything
I don't need.

Thanks again!
Allyson

On 17 May 2010 13:45, David Nickerson <david.nickerson at gmail.com> wrote:

> > Well, I tried just adding the --enable-annotools as suggested by Andrew,
> and
> > I had a successful build all the way through the steps up to (and
> including)
> > the "make" command. When I then tried "sudo make install", I got partway
> > through that, and then was presented with the following error:
> >
> > /usr/bin/ld: cannot find -lannotools
> > collect2: ld returned 1 exit status
> > libtool: install: error: relink `libcellml_java_bridge.la' with the
> above
> > command before installing it
> > make[2]: *** [install-libLTLIBRARIES] Error 1
> >
> > I'm not sure what to do with this error. Does anyone have any ideas?
>
> did you do a 'make clean' in your build directory first? or start
> elsewhere from a clean slate?
>
> does doing just a 'make' finish successfully with no error messages
> hidden in the output?
> _______________________________________________
> cellml-tools-developers mailing list
> cellml-tools-developers at cellml.org
> http://www.cellml.org/mailman/listinfo/cellml-tools-developers
>



--
Allyson Lister
http://themindwobbles.wordpress.com

CISBAN, http://www.cisban.ac.uk
Newcastle University
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