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[cellml-dev] cellml_services in java version of the CellML DOM API


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  • From: a.l.lister at newcastle.ac.uk (Allyson Lister)
  • Subject: [cellml-dev] cellml_services in java version of the CellML DOM API
  • Date: Mon, 17 May 2010 14:55:46 +0100
Hi all,

One final update. To try to solve the problem with the missing classes
within cellml.jar, I ran the entire build (after a "make clean") using this
configure command:

./configure --enable-context=no --enable-annotools --enable-cuses
--enable-cevas --enable-malaes --enable-ccgs --enable-cis --enable-vacss
--enable-rdf --enable-celeds --enable-java

However, while a number of new classes appeared within cellml_bootstrap/ in
cellml.jar, none of them were the class I was trying to get built,
CellMLBootstrap, called in the following bit of code:

bootstrap = cellml_bootstrap.CellMLBootstrap.createCellMLBootstrap();

Can anyone let me know which --enable option I should use to get this class?

And I'm still having the same error with "ld" that I did before. Any other
ideas on that one?

/usr/bin/ld: cannot find -lannotools
collect2: ld returned 1 exit status
libtool: install: error: relink `libcellml_java_bridge.la' with the above
command before installing it
make[2]: *** [install-libLTLIBRARIES] Error 1
make[2]: Leaving directory `/home/allyson/Apps/cellml'
make[1]: *** [install-am] Error 2
make[1]: Leaving directory `/home/allyson/Apps/cellml'
make: *** [install] Error 2

Thanks again,

Allyson

On 17 May 2010 13:59, Allyson Lister <a.l.lister at newcastle.ac.uk> wrote:

> Hi,
>
> I did run a make clean first, and then ran make, which ran with 0 errors
> hidden in the output. I did not use a brand-new directory, but the one I
> used before. However, I've just tried with a new directory using the
> following commands:
>
> hg clone http://cellml-api.hg.sourceforge.net:8000/hgroot/cellml-api
> cd cellml-api
> aclocal && autoconf && automake
> ./configure --enable-java --enable-rdf --enable-annotools
> make
> sudo make install
>
> ...and I get the same "ld" error as described before.
>
> As a second problem, while I was waiting for an answer to the "ld" error, I
> thought I'd try to compile my java code with the updated cellml.jar file. I
> got a different error this time:
>
> CellMLReader.java:[36,40] cannot find symbol
> symbol : class CellMLBootstrap
> location: package cellml_bootstrap
>
> Indeed, when I look in the cellml.jar file, while there is a
> cellml_bootstrap directory, the only thing in it is
> AnnoToolsBootstrap.class, and no CellML Bootstrap class. Which extra option
> do I need to get this class? I'm finding the configure options really
> difficult to understand: is there a list somewhere of which classes will be
> created according to which configure options? I'd rather not build anything
> I don't need.
>
> Thanks again!
> Allyson
>
>
> On 17 May 2010 13:45, David Nickerson <david.nickerson at gmail.com> wrote:
>
>> > Well, I tried just adding the --enable-annotools as suggested by Andrew,
>> and
>> > I had a successful build all the way through the steps up to (and
>> including)
>> > the "make" command. When I then tried "sudo make install", I got partway
>> > through that, and then was presented with the following error:
>> >
>> > /usr/bin/ld: cannot find -lannotools
>> > collect2: ld returned 1 exit status
>> > libtool: install: error: relink `libcellml_java_bridge.la' with the
>> above
>> > command before installing it
>> > make[2]: *** [install-libLTLIBRARIES] Error 1
>> >
>> > I'm not sure what to do with this error. Does anyone have any ideas?
>>
>> did you do a 'make clean' in your build directory first? or start
>> elsewhere from a clean slate?
>>
>> does doing just a 'make' finish successfully with no error messages
>> hidden in the output?
>> _______________________________________________
>> cellml-tools-developers mailing list
>> cellml-tools-developers at cellml.org
>> http://www.cellml.org/mailman/listinfo/cellml-tools-developers
>>
>
>
>
> --
> Allyson Lister
> http://themindwobbles.wordpress.com
>
> CISBAN, http://www.cisban.ac.uk
> Newcastle University
>



--
Allyson Lister
http://themindwobbles.wordpress.com

CISBAN, http://www.cisban.ac.uk
Newcastle University
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